From e09104974d13f66f4ec2e7ae2310346996cf2356 Mon Sep 17 00:00:00 2001
From: Alberto Ruiz <aruiz@um.es>
Date: Sat, 20 Jun 2015 13:49:48 +0200
Subject: NFData for Mod, alternative luPacked'' using gaxpy

---
 packages/base/src/Internal/Modular.hs             |  5 +++
 packages/base/src/Internal/Util.hs                | 41 +++++++++++++++++++++--
 packages/tests/hmatrix-tests.cabal                |  2 +-
 packages/tests/src/Numeric/LinearAlgebra/Tests.hs |  3 +-
 4 files changed, 47 insertions(+), 4 deletions(-)

(limited to 'packages')

diff --git a/packages/base/src/Internal/Modular.hs b/packages/base/src/Internal/Modular.hs
index 1cae1ac..098817e 100644
--- a/packages/base/src/Internal/Modular.hs
+++ b/packages/base/src/Internal/Modular.hs
@@ -44,6 +44,7 @@ import Foreign.ForeignPtr(castForeignPtr)
 import Foreign.Storable
 import Data.Ratio
 import Data.Complex
+import Control.DeepSeq ( NFData(..) )
 
 
 
@@ -51,6 +52,10 @@ import Data.Complex
 newtype Mod (n :: Nat) t = Mod {unMod:: t}
   deriving (Storable)
 
+instance (NFData t) => NFData (Mod n t)
+  where
+    rnf (Mod x) = rnf x
+
 infixr 5 ./.
 type (./.) x n = Mod n x
 
diff --git a/packages/base/src/Internal/Util.hs b/packages/base/src/Internal/Util.hs
index 924ca4c..bf6c8b6 100644
--- a/packages/base/src/Internal/Util.hs
+++ b/packages/base/src/Internal/Util.hs
@@ -54,7 +54,7 @@ module Internal.Util(
     -- ** 2D
     corr2, conv2, separable,
     block2x2,block3x3,view1,unView1,foldMatrix,
-    gaussElim_1, gaussElim_2, gaussElim, luST, luSolve', luSolve'', luPacked'
+    gaussElim_1, gaussElim_2, gaussElim, luST, luSolve', luSolve'', luPacked', luPacked''
 ) where
 
 import Internal.Vector
@@ -73,7 +73,7 @@ import Control.Monad(when,forM_)
 import Text.Printf
 import Data.List.Split(splitOn)
 import Data.List(intercalate,sortBy,foldl')
-import Control.Arrow((&&&))
+import Control.Arrow((&&&),(***))
 import Data.Complex
 import Data.Function(on)
 import Internal.ST
@@ -714,6 +714,43 @@ luPacked' x = mutable (luST (magnit 0)) x
 
 --------------------------------------------------------------------------------
 
+scalS a (Slice x r0 c0 nr nc) = rowOper (SCAL a (RowRange r0 (r0+nr-1)) (ColRange c0 (c0+nc-1))) x
+
+view x k r = do
+    d <- readMatrix x k k
+    let rr = r-1-k
+        o  = if k < r-1 then 1 else 0
+        s = Slice x (k+1) (k+1) rr rr
+        u = Slice x k     (k+1) o  rr
+        l = Slice x (k+1) k     rr o
+    return (d,u,l,s)
+
+withVec r f = \s x -> do
+    p <- newUndefinedVector r
+    _ <- f s x p
+    v <- unsafeFreezeVector p
+    return v
+
+
+luPacked'' m = (id *** toList) (mutable (withVec (rows m) lu2) m)
+  where
+    lu2 (r,_) x p = do
+        forM_ [0..r-1] $ \k -> do
+            pivot x p k
+            (d,u,l,s) <- view x k r
+            when (magnit 0 d) $ do
+                scalS (recip d) l
+                gemmm 1 s (-1) l u
+
+    pivot x p k = do
+        j <- maxIndex . abs . flatten <$> extractMatrix x (FromRow k) (Col k)
+        writeVector p k (j+k)
+        swap k (k+j)
+      where
+        swap i j = rowOper (SWAP i j AllCols) x
+
+--------------------------------------------------------------------------------
+
 rowRange m = [0..rows m -1]
 
 at k = Pos (idxs[k])
diff --git a/packages/tests/hmatrix-tests.cabal b/packages/tests/hmatrix-tests.cabal
index de796e8..49e0640 100644
--- a/packages/tests/hmatrix-tests.cabal
+++ b/packages/tests/hmatrix-tests.cabal
@@ -26,7 +26,7 @@ flag gsl
 
 library
 
-    Build-Depends:      base >= 4 && < 5,
+    Build-Depends:      base >= 4 && < 5, deepseq,
                         QuickCheck >= 2, HUnit, random,
                         hmatrix >= 0.17
     if flag(gsl)
diff --git a/packages/tests/src/Numeric/LinearAlgebra/Tests.hs b/packages/tests/src/Numeric/LinearAlgebra/Tests.hs
index d1fc6ec..b226c9f 100644
--- a/packages/tests/src/Numeric/LinearAlgebra/Tests.hs
+++ b/packages/tests/src/Numeric/LinearAlgebra/Tests.hs
@@ -47,6 +47,7 @@ import Debug.Trace
 import Control.Monad(when)
 import Control.Applicative
 import Control.Monad(ap)
+import Control.DeepSeq ( NFData(..) )
 
 import Test.QuickCheck(Arbitrary,arbitrary,coarbitrary,choose,vector
                       ,sized,classify,Testable,Property
@@ -770,7 +771,7 @@ cholBench = do
 luBenchN f n x msg = do
     let m = diagRect 1 (fromList (replicate n x)) n n
     m `seq` putStr ""
-    time (msg ++ " "++ show n) (f m)
+    time (msg ++ " "++ show n) (rnf $ f m)
 
 luBench = do
     putStrLn ""
-- 
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