{-# LANGUAGE RecordWildCards #-} {-# LANGUAGE MultiParamTypeClasses #-} {-# LANGUAGE FlexibleInstances #-} module Numeric.Sparse( GMatrix(..), mkSparse, mkDiagR, dense, AssocMatrix, toDense, gmXv, (!#>) )where import Data.Packed.Numeric import qualified Data.Vector.Storable as V import Data.Function(on) import Control.Arrow((***)) import Control.Monad(when) import Data.List(groupBy, sort) import Foreign.C.Types(CInt(..)) import Data.Packed.Development import System.IO.Unsafe(unsafePerformIO) import Foreign(Ptr) import Text.Printf(printf) infixl 0 ~!~ c ~!~ msg = when c (error msg) type AssocMatrix = [((Int,Int),Double)] data GMatrix = CSR { csrVals :: Vector Double , csrCols :: Vector CInt , csrRows :: Vector CInt , nRows :: Int , nCols :: Int } | CSC { cscVals :: Vector Double , cscRows :: Vector CInt , cscCols :: Vector CInt , nRows :: Int , nCols :: Int } | Diag { diagVals :: Vector Double , nRows :: Int , nCols :: Int } | Dense { gmDense :: Matrix Double , nRows :: Int , nCols :: Int } -- | Banded deriving Show dense :: Matrix Double -> GMatrix dense m = Dense{..} where gmDense = m nRows = rows m nCols = cols m mkSparse :: AssocMatrix -> GMatrix mkSparse sm' = CSR{..} where sm = sort sm' rws = map ((fromList *** fromList) . unzip . map ((succ.fi.snd) *** id) ) . groupBy ((==) `on` (fst.fst)) $ sm rszs = map (fi . dim . fst) rws csrRows = fromList (scanl (+) 1 rszs) csrVals = vjoin (map snd rws) csrCols = vjoin (map fst rws) nRows = dim csrRows - 1 nCols = fromIntegral (V.maximum csrCols) mkDiagR r c v | dim v <= min r c = Diag{..} | otherwise = error $ printf "mkDiagR: incorrect sizes (%d,%d) [%d]" r c (dim v) where nRows = r nCols = c diagVals = v type IV t = CInt -> Ptr CInt -> t type V t = CInt -> Ptr Double -> t type SMxV = V (IV (IV (V (V (IO CInt))))) gmXv :: GMatrix -> Vector Double -> Vector Double gmXv CSR{..} v = unsafePerformIO $ do dim v /= nCols ~!~ printf "gmXv (CSR): incorrect sizes: (%d,%d) x %d" nRows nCols (dim v) r <- createVector nRows app5 c_smXv vec csrVals vec csrCols vec csrRows vec v vec r "CSRXv" return r gmXv CSC{..} v = unsafePerformIO $ do dim v /= nCols ~!~ printf "gmXv (CSC): incorrect sizes: (%d,%d) x %d" nRows nCols (dim v) r <- createVector nRows app5 c_smTXv vec cscVals vec cscRows vec cscCols vec v vec r "CSCXv" return r gmXv Diag{..} v | dim v == nCols = vjoin [ subVector 0 (dim diagVals) v `mul` diagVals , konst 0 (nRows - dim diagVals) ] | otherwise = error $ printf "gmXv (Diag): incorrect sizes: (%d,%d) [%d] x %d" nRows nCols (dim diagVals) (dim v) gmXv Dense{..} v | dim v == nCols = mXv gmDense v | otherwise = error $ printf "gmXv (Dense): incorrect sizes: (%d,%d) x %d" nRows nCols (dim v) -- | general matrix - vector product infixr 8 !#> (!#>) :: GMatrix -> Vector Double -> Vector Double (!#>) = gmXv instance Contraction GMatrix (Vector Double) (Vector Double) where contraction = gmXv -------------------------------------------------------------------------------- foreign import ccall unsafe "smXv" c_smXv :: SMxV foreign import ccall unsafe "smTXv" c_smTXv :: SMxV -------------------------------------------------------------------------------- toDense :: AssocMatrix -> Matrix Double toDense asm = assoc (r+1,c+1) 0 asm where (r,c) = (maximum *** maximum) . unzip . map fst $ asm instance Transposable GMatrix GMatrix where tr (CSR vs cs rs n m) = CSC vs cs rs m n tr (CSC vs rs cs n m) = CSR vs rs cs m n tr (Diag v n m) = Diag v m n tr (Dense a n m) = Dense (tr a) m n