diff options
author | Alberto Ruiz <aruiz@um.es> | 2014-05-16 14:13:49 +0200 |
---|---|---|
committer | Alberto Ruiz <aruiz@um.es> | 2014-05-16 14:13:49 +0200 |
commit | 51f4cc7b4b301142b8df73568ffaa448f9e6dd50 (patch) | |
tree | 7f9b9a26344a23a0d1e3fb6e4105fe968465cd2a | |
parent | 1838c4248679b7476bb8716a76171712dc3cd335 (diff) |
license changes, reexport modules
21 files changed, 289 insertions, 89 deletions
diff --git a/packages/base/hmatrix-base.cabal b/packages/base/hmatrix-base.cabal index 3f12dad..638390a 100644 --- a/packages/base/hmatrix-base.cabal +++ b/packages/base/hmatrix-base.cabal | |||
@@ -39,10 +39,12 @@ library | |||
39 | Numeric.LinearAlgebra.LAPACK | 39 | Numeric.LinearAlgebra.LAPACK |
40 | Numeric.LinearAlgebra.Algorithms | 40 | Numeric.LinearAlgebra.Algorithms |
41 | Numeric.Container | 41 | Numeric.Container |
42 | Numeric.LinearAlgebra | ||
43 | Numeric.LinearAlgebra.Util | 42 | Numeric.LinearAlgebra.Util |
44 | Numeric.LinearAlgebra.Util.Convolution | 43 | Numeric.LinearAlgebra.Util.Convolution |
45 | Data.Packed.IO | 44 | Data.Packed.IO |
45 | Numeric.LinearAlgebra.Base | ||
46 | Numeric.LinearAlgebra.Devel | ||
47 | Numeric.LinearAlgebra.Data | ||
46 | 48 | ||
47 | other-modules: Data.Packed.Internal, | 49 | other-modules: Data.Packed.Internal, |
48 | Data.Packed.Internal.Common, | 50 | Data.Packed.Internal.Common, |
diff --git a/packages/base/src/Data/Packed.hs b/packages/base/src/Data/Packed.hs index c66718a..129bd22 100644 --- a/packages/base/src/Data/Packed.hs +++ b/packages/base/src/Data/Packed.hs | |||
@@ -10,6 +10,7 @@ Types for dense 'Vector' and 'Matrix' of 'Storable' elements. | |||
10 | 10 | ||
11 | -} | 11 | -} |
12 | ----------------------------------------------------------------------------- | 12 | ----------------------------------------------------------------------------- |
13 | {-# OPTIONS_HADDOCK hide #-} | ||
13 | 14 | ||
14 | module Data.Packed ( | 15 | module Data.Packed ( |
15 | -- * Vector | 16 | -- * Vector |
diff --git a/packages/base/src/Data/Packed/Development.hs b/packages/base/src/Data/Packed/Development.hs index 6dfd551..1efedc9 100644 --- a/packages/base/src/Data/Packed/Development.hs +++ b/packages/base/src/Data/Packed/Development.hs | |||
@@ -13,6 +13,7 @@ | |||
13 | -- in the @examples\/devel@ folder included in the package. | 13 | -- in the @examples\/devel@ folder included in the package. |
14 | -- | 14 | -- |
15 | ----------------------------------------------------------------------------- | 15 | ----------------------------------------------------------------------------- |
16 | {-# OPTIONS_HADDOCK hide #-} | ||
16 | 17 | ||
17 | module Data.Packed.Development ( | 18 | module Data.Packed.Development ( |
18 | createVector, createMatrix, | 19 | createVector, createMatrix, |
diff --git a/packages/base/src/Data/Packed/Foreign.hs b/packages/base/src/Data/Packed/Foreign.hs index efa51ca..1ec3694 100644 --- a/packages/base/src/Data/Packed/Foreign.hs +++ b/packages/base/src/Data/Packed/Foreign.hs | |||
@@ -6,6 +6,7 @@ | |||
6 | -- @ glUniformMatrix4fv 0 1 (fromIntegral gl_TRUE) \`appMatrix\` perspective 0.01 100 (pi\/2) (4\/3) | 6 | -- @ glUniformMatrix4fv 0 1 (fromIntegral gl_TRUE) \`appMatrix\` perspective 0.01 100 (pi\/2) (4\/3) |
7 | -- @ | 7 | -- @ |
8 | -- | 8 | -- |
9 | {-# OPTIONS_HADDOCK hide #-} | ||
9 | module Data.Packed.Foreign | 10 | module Data.Packed.Foreign |
10 | ( app | 11 | ( app |
11 | , appVector, appVectorLen | 12 | , appVector, appVectorLen |
diff --git a/packages/base/src/Data/Packed/Internal.hs b/packages/base/src/Data/Packed/Internal.hs index 537e51e..59a72fc 100644 --- a/packages/base/src/Data/Packed/Internal.hs +++ b/packages/base/src/Data/Packed/Internal.hs | |||
@@ -2,11 +2,9 @@ | |||
2 | -- | | 2 | -- | |
3 | -- Module : Data.Packed.Internal | 3 | -- Module : Data.Packed.Internal |
4 | -- Copyright : (c) Alberto Ruiz 2007 | 4 | -- Copyright : (c) Alberto Ruiz 2007 |
5 | -- License : GPL-style | 5 | -- License : BSD3 |
6 | -- | 6 | -- Maintainer : Alberto Ruiz |
7 | -- Maintainer : Alberto Ruiz <aruiz@um.es> | ||
8 | -- Stability : provisional | 7 | -- Stability : provisional |
9 | -- Portability : portable | ||
10 | -- | 8 | -- |
11 | -- Reexports all internal modules | 9 | -- Reexports all internal modules |
12 | -- | 10 | -- |
diff --git a/packages/base/src/Data/Packed/Matrix.hs b/packages/base/src/Data/Packed/Matrix.hs index d94d167..b3be823 100644 --- a/packages/base/src/Data/Packed/Matrix.hs +++ b/packages/base/src/Data/Packed/Matrix.hs | |||
@@ -8,9 +8,8 @@ | |||
8 | -- | | 8 | -- | |
9 | -- Module : Data.Packed.Matrix | 9 | -- Module : Data.Packed.Matrix |
10 | -- Copyright : (c) Alberto Ruiz 2007-10 | 10 | -- Copyright : (c) Alberto Ruiz 2007-10 |
11 | -- License : GPL | 11 | -- License : BSD3 |
12 | -- | 12 | -- Maintainer : Alberto Ruiz |
13 | -- Maintainer : Alberto Ruiz <aruiz@um.es> | ||
14 | -- Stability : provisional | 13 | -- Stability : provisional |
15 | -- | 14 | -- |
16 | -- A Matrix representation suitable for numerical computations using LAPACK and GSL. | 15 | -- A Matrix representation suitable for numerical computations using LAPACK and GSL. |
diff --git a/packages/base/src/Data/Packed/Numeric.hs b/packages/base/src/Data/Packed/Numeric.hs index 4892089..c13e91d 100644 --- a/packages/base/src/Data/Packed/Numeric.hs +++ b/packages/base/src/Data/Packed/Numeric.hs | |||
@@ -10,7 +10,6 @@ | |||
10 | -- Module : Data.Packed.Numeric | 10 | -- Module : Data.Packed.Numeric |
11 | -- Copyright : (c) Alberto Ruiz 2010-14 | 11 | -- Copyright : (c) Alberto Ruiz 2010-14 |
12 | -- License : BSD3 | 12 | -- License : BSD3 |
13 | -- | ||
14 | -- Maintainer : Alberto Ruiz | 13 | -- Maintainer : Alberto Ruiz |
15 | -- Stability : provisional | 14 | -- Stability : provisional |
16 | -- | 15 | -- |
diff --git a/packages/base/src/Data/Packed/ST.hs b/packages/base/src/Data/Packed/ST.hs index dae457c..5c45c7b 100644 --- a/packages/base/src/Data/Packed/ST.hs +++ b/packages/base/src/Data/Packed/ST.hs | |||
@@ -9,12 +9,12 @@ | |||
9 | -- License : BSD3 | 9 | -- License : BSD3 |
10 | -- Maintainer : Alberto Ruiz | 10 | -- Maintainer : Alberto Ruiz |
11 | -- Stability : provisional | 11 | -- Stability : provisional |
12 | -- Portability : portable | ||
13 | -- | 12 | -- |
14 | -- In-place manipulation inside the ST monad. | 13 | -- In-place manipulation inside the ST monad. |
15 | -- See examples/inplace.hs in the distribution. | 14 | -- See examples/inplace.hs in the distribution. |
16 | -- | 15 | -- |
17 | ----------------------------------------------------------------------------- | 16 | ----------------------------------------------------------------------------- |
17 | {-# OPTIONS_HADDOCK hide #-} | ||
18 | 18 | ||
19 | module Data.Packed.ST ( | 19 | module Data.Packed.ST ( |
20 | -- * Mutable Vectors | 20 | -- * Mutable Vectors |
diff --git a/packages/base/src/Data/Packed/Vector.hs b/packages/base/src/Data/Packed/Vector.hs index a8f6bb1..53fe563 100644 --- a/packages/base/src/Data/Packed/Vector.hs +++ b/packages/base/src/Data/Packed/Vector.hs | |||
@@ -4,9 +4,8 @@ | |||
4 | -- | | 4 | -- | |
5 | -- Module : Data.Packed.Vector | 5 | -- Module : Data.Packed.Vector |
6 | -- Copyright : (c) Alberto Ruiz 2007-10 | 6 | -- Copyright : (c) Alberto Ruiz 2007-10 |
7 | -- License : GPL | 7 | -- License : BSD3 |
8 | -- | 8 | -- Maintainer : Alberto Ruiz |
9 | -- Maintainer : Alberto Ruiz <aruiz@um.es> | ||
10 | -- Stability : provisional | 9 | -- Stability : provisional |
11 | -- | 10 | -- |
12 | -- 1D arrays suitable for numeric computations using external libraries. | 11 | -- 1D arrays suitable for numeric computations using external libraries. |
diff --git a/packages/base/src/Numeric/Container.hs b/packages/base/src/Numeric/Container.hs index b7d3b80..240e5f5 100644 --- a/packages/base/src/Numeric/Container.hs +++ b/packages/base/src/Numeric/Container.hs | |||
@@ -9,11 +9,9 @@ | |||
9 | -- | | 9 | -- | |
10 | -- Module : Numeric.Container | 10 | -- Module : Numeric.Container |
11 | -- Copyright : (c) Alberto Ruiz 2010-14 | 11 | -- Copyright : (c) Alberto Ruiz 2010-14 |
12 | -- License : GPL | 12 | -- License : BSD3 |
13 | -- | 13 | -- Maintainer : Alberto Ruiz |
14 | -- Maintainer : Alberto Ruiz <aruiz@um.es> | ||
15 | -- Stability : provisional | 14 | -- Stability : provisional |
16 | -- Portability : portable | ||
17 | -- | 15 | -- |
18 | -- Basic numeric operations on 'Vector' and 'Matrix', including conversion routines. | 16 | -- Basic numeric operations on 'Vector' and 'Matrix', including conversion routines. |
19 | -- | 17 | -- |
diff --git a/packages/base/src/Numeric/LinearAlgebra.hs b/packages/base/src/Numeric/LinearAlgebra.hs deleted file mode 100644 index 1db860c..0000000 --- a/packages/base/src/Numeric/LinearAlgebra.hs +++ /dev/null | |||
@@ -1,30 +0,0 @@ | |||
1 | ----------------------------------------------------------------------------- | ||
2 | {- | | ||
3 | Module : Numeric.LinearAlgebra | ||
4 | Copyright : (c) Alberto Ruiz 2006-10 | ||
5 | License : GPL-style | ||
6 | |||
7 | Maintainer : Alberto Ruiz (aruiz at um dot es) | ||
8 | Stability : provisional | ||
9 | Portability : uses ffi | ||
10 | |||
11 | This module reexports all normally required functions for Linear Algebra applications. | ||
12 | |||
13 | It also provides instances of standard classes 'Show', 'Read', 'Eq', | ||
14 | 'Num', 'Fractional', and 'Floating' for 'Vector' and 'Matrix'. | ||
15 | In arithmetic operations one-component vectors and matrices automatically | ||
16 | expand to match the dimensions of the other operand. | ||
17 | |||
18 | -} | ||
19 | ----------------------------------------------------------------------------- | ||
20 | {-# OPTIONS_HADDOCK hide #-} | ||
21 | |||
22 | module Numeric.LinearAlgebra ( | ||
23 | module Numeric.Container, | ||
24 | module Numeric.LinearAlgebra.Algorithms | ||
25 | ) where | ||
26 | |||
27 | import Numeric.Container | ||
28 | import Numeric.LinearAlgebra.Algorithms | ||
29 | import Numeric.Matrix() | ||
30 | import Numeric.Vector() | ||
diff --git a/packages/base/src/Numeric/LinearAlgebra/Algorithms.hs b/packages/base/src/Numeric/LinearAlgebra/Algorithms.hs index 6f40683..92761be 100644 --- a/packages/base/src/Numeric/LinearAlgebra/Algorithms.hs +++ b/packages/base/src/Numeric/LinearAlgebra/Algorithms.hs | |||
@@ -7,12 +7,10 @@ | |||
7 | ----------------------------------------------------------------------------- | 7 | ----------------------------------------------------------------------------- |
8 | {- | | 8 | {- | |
9 | Module : Numeric.LinearAlgebra.Algorithms | 9 | Module : Numeric.LinearAlgebra.Algorithms |
10 | Copyright : (c) Alberto Ruiz 2006-9 | 10 | Copyright : (c) Alberto Ruiz 2006-14 |
11 | License : GPL-style | 11 | License : BSD3 |
12 | 12 | Maintainer : Alberto Ruiz | |
13 | Maintainer : Alberto Ruiz (aruiz at um dot es) | ||
14 | Stability : provisional | 13 | Stability : provisional |
15 | Portability : uses ffi | ||
16 | 14 | ||
17 | High level generic interface to common matrix computations. | 15 | High level generic interface to common matrix computations. |
18 | 16 | ||
@@ -20,6 +18,7 @@ Specific functions for particular base types can also be explicitly | |||
20 | imported from "Numeric.LinearAlgebra.LAPACK". | 18 | imported from "Numeric.LinearAlgebra.LAPACK". |
21 | 19 | ||
22 | -} | 20 | -} |
21 | {-# OPTIONS_HADDOCK hide #-} | ||
23 | ----------------------------------------------------------------------------- | 22 | ----------------------------------------------------------------------------- |
24 | 23 | ||
25 | module Numeric.LinearAlgebra.Algorithms ( | 24 | module Numeric.LinearAlgebra.Algorithms ( |
diff --git a/packages/hmatrix/src/Numeric/HMatrix.hs b/packages/base/src/Numeric/LinearAlgebra/Base.hs index fcd3e02..8aa7846 100644 --- a/packages/hmatrix/src/Numeric/HMatrix.hs +++ b/packages/base/src/Numeric/LinearAlgebra/Base.hs | |||
@@ -1,9 +1,8 @@ | |||
1 | ----------------------------------------------------------------------------- | 1 | ----------------------------------------------------------------------------- |
2 | {- | | 2 | {- | |
3 | Module : Numeric.HMatrix | 3 | Module : Numeric.LinearAlgebra |
4 | Copyright : (c) Alberto Ruiz 2006-14 | 4 | Copyright : (c) Alberto Ruiz 2006-14 |
5 | License : GPL | 5 | License : BSD3 |
6 | |||
7 | Maintainer : Alberto Ruiz | 6 | Maintainer : Alberto Ruiz |
8 | Stability : provisional | 7 | Stability : provisional |
9 | 8 | ||
@@ -11,10 +10,10 @@ This module reexports the most common Linear Algebra functions. | |||
11 | 10 | ||
12 | -} | 11 | -} |
13 | ----------------------------------------------------------------------------- | 12 | ----------------------------------------------------------------------------- |
14 | module Numeric.HMatrix ( | 13 | module Numeric.LinearAlgebra.Base ( |
15 | 14 | ||
16 | -- * Basic types and data processing | 15 | -- * Basic types and data processing |
17 | module Numeric.HMatrix.Data, | 16 | module Numeric.LinearAlgebra.Data, |
18 | 17 | ||
19 | -- | The standard numeric classes are defined elementwise: | 18 | -- | The standard numeric classes are defined elementwise: |
20 | -- | 19 | -- |
@@ -121,19 +120,20 @@ module Numeric.HMatrix ( | |||
121 | corr, conv, corrMin, corr2, conv2, | 120 | corr, conv, corrMin, corr2, conv2, |
122 | 121 | ||
123 | -- * Random arrays | 122 | -- * Random arrays |
124 | rand, randn, RandDist(..), randomVector, gaussianSample, uniformSample, | 123 | |
124 | -- | rand, randn, RandDist(..), randomVector, gaussianSample, uniformSample | ||
125 | 125 | ||
126 | -- * Misc | 126 | -- * Misc |
127 | meanCov, peps, relativeError, haussholder, optimiseMult, udot | 127 | meanCov, peps, relativeError, haussholder, optimiseMult, udot |
128 | ) where | 128 | ) where |
129 | 129 | ||
130 | import Numeric.HMatrix.Data | 130 | import Numeric.LinearAlgebra.Data |
131 | 131 | ||
132 | --import Numeric.Matrix() | 132 | import Numeric.Matrix() |
133 | --import Numeric.Vector() | 133 | import Numeric.Vector() |
134 | import Numeric.Container | 134 | import Numeric.Container |
135 | import Numeric.LinearAlgebra.Algorithms | 135 | import Numeric.LinearAlgebra.Algorithms |
136 | import Numeric.LinearAlgebra.Util | 136 | import Numeric.LinearAlgebra.Util |
137 | import Numeric.Random | 137 | |
138 | 138 | ||
139 | 139 | ||
diff --git a/packages/hmatrix/src/Numeric/HMatrix/Data.hs b/packages/base/src/Numeric/LinearAlgebra/Data.hs index 5d7ce4f..3bc88f9 100644 --- a/packages/hmatrix/src/Numeric/HMatrix/Data.hs +++ b/packages/base/src/Numeric/LinearAlgebra/Data.hs | |||
@@ -1,9 +1,8 @@ | |||
1 | -------------------------------------------------------------------------------- | 1 | -------------------------------------------------------------------------------- |
2 | {- | | 2 | {- | |
3 | Module : Numeric.HMatrix.Data | 3 | Module : Numeric.LinearAlgebra.Data |
4 | Copyright : (c) Alberto Ruiz 2014 | 4 | Copyright : (c) Alberto Ruiz 2014 |
5 | License : GPL | 5 | License : BSD3 |
6 | |||
7 | Maintainer : Alberto Ruiz | 6 | Maintainer : Alberto Ruiz |
8 | Stability : provisional | 7 | Stability : provisional |
9 | 8 | ||
@@ -12,7 +11,7 @@ Basic data processing. | |||
12 | -} | 11 | -} |
13 | -------------------------------------------------------------------------------- | 12 | -------------------------------------------------------------------------------- |
14 | 13 | ||
15 | module Numeric.HMatrix.Data( | 14 | module Numeric.LinearAlgebra.Data( |
16 | 15 | ||
17 | -- * Vector | 16 | -- * Vector |
18 | -- | 1D arrays are storable vectors from the vector package. | 17 | -- | 1D arrays are storable vectors from the vector package. |
@@ -44,10 +43,9 @@ module Numeric.HMatrix.Data( | |||
44 | find, maxIndex, minIndex, maxElement, minElement, atIndex, | 43 | find, maxIndex, minIndex, maxElement, minElement, atIndex, |
45 | 44 | ||
46 | -- * IO | 45 | -- * IO |
47 | disp, dispf, disps, dispcf, latexFormat, format, | 46 | disp, dispf, disps, dispcf, latexFormat, format, readMatrix, |
48 | loadMatrix, saveMatrix, fromFile, fileDimensions, | 47 | |
49 | readMatrix, | 48 | -- | loadMatrix, saveMatrix, fromFile, fileDimensions, fscanfVector, fprintfVector, freadVector, fwriteVector |
50 | fscanfVector, fprintfVector, freadVector, fwriteVector, | ||
51 | 49 | ||
52 | -- * Conversion | 50 | -- * Conversion |
53 | Convert(..), | 51 | Convert(..), |
@@ -64,7 +62,7 @@ module Numeric.HMatrix.Data( | |||
64 | import Data.Packed.Vector | 62 | import Data.Packed.Vector |
65 | import Data.Packed.Matrix | 63 | import Data.Packed.Matrix |
66 | import Numeric.Container | 64 | import Numeric.Container |
67 | import Numeric.IO | 65 | import Data.Packed.IO |
68 | import Numeric.LinearAlgebra.Util | 66 | import Numeric.LinearAlgebra.Util |
69 | import Data.Complex | 67 | import Data.Complex |
70 | 68 | ||
diff --git a/packages/hmatrix/src/Numeric/HMatrix/Devel.hs b/packages/base/src/Numeric/LinearAlgebra/Devel.hs index b921f44..c41db2d 100644 --- a/packages/hmatrix/src/Numeric/HMatrix/Devel.hs +++ b/packages/base/src/Numeric/LinearAlgebra/Devel.hs | |||
@@ -2,8 +2,7 @@ | |||
2 | {- | | 2 | {- | |
3 | Module : Numeric.HMatrix.Devel | 3 | Module : Numeric.HMatrix.Devel |
4 | Copyright : (c) Alberto Ruiz 2014 | 4 | Copyright : (c) Alberto Ruiz 2014 |
5 | License : GPL | 5 | License : BSD3 |
6 | |||
7 | Maintainer : Alberto Ruiz | 6 | Maintainer : Alberto Ruiz |
8 | Stability : provisional | 7 | Stability : provisional |
9 | 8 | ||
@@ -12,7 +11,7 @@ The library can be easily extended using the tools in this module. | |||
12 | -} | 11 | -} |
13 | -------------------------------------------------------------------------------- | 12 | -------------------------------------------------------------------------------- |
14 | 13 | ||
15 | module Numeric.HMatrix.Devel( | 14 | module Numeric.LinearAlgebra.Devel( |
16 | -- * FFI helpers | 15 | -- * FFI helpers |
17 | -- | Sample usage, to upload a perspective matrix to a shader. | 16 | -- | Sample usage, to upload a perspective matrix to a shader. |
18 | -- | 17 | -- |
diff --git a/packages/base/src/Numeric/LinearAlgebra/LAPACK.hs b/packages/base/src/Numeric/LinearAlgebra/LAPACK.hs index 9cb67d4..40fef45 100644 --- a/packages/base/src/Numeric/LinearAlgebra/LAPACK.hs +++ b/packages/base/src/Numeric/LinearAlgebra/LAPACK.hs | |||
@@ -3,7 +3,6 @@ | |||
3 | -- Module : Numeric.LinearAlgebra.LAPACK | 3 | -- Module : Numeric.LinearAlgebra.LAPACK |
4 | -- Copyright : (c) Alberto Ruiz 2006-14 | 4 | -- Copyright : (c) Alberto Ruiz 2006-14 |
5 | -- License : BSD3 | 5 | -- License : BSD3 |
6 | -- | ||
7 | -- Maintainer : Alberto Ruiz | 6 | -- Maintainer : Alberto Ruiz |
8 | -- Stability : provisional | 7 | -- Stability : provisional |
9 | -- | 8 | -- |
diff --git a/packages/base/src/Numeric/LinearAlgebra/Util.hs b/packages/base/src/Numeric/LinearAlgebra/Util.hs index 533c54b..f0470ab 100644 --- a/packages/base/src/Numeric/LinearAlgebra/Util.hs +++ b/packages/base/src/Numeric/LinearAlgebra/Util.hs | |||
@@ -3,9 +3,8 @@ | |||
3 | {- | | 3 | {- | |
4 | Module : Numeric.LinearAlgebra.Util | 4 | Module : Numeric.LinearAlgebra.Util |
5 | Copyright : (c) Alberto Ruiz 2013 | 5 | Copyright : (c) Alberto Ruiz 2013 |
6 | License : GPL | 6 | License : BSD3 |
7 | 7 | Maintainer : Alberto Ruiz | |
8 | Maintainer : Alberto Ruiz (aruiz at um dot es) | ||
9 | Stability : provisional | 8 | Stability : provisional |
10 | 9 | ||
11 | -} | 10 | -} |
diff --git a/packages/base/src/Numeric/LinearAlgebra/Util/Convolution.hs b/packages/base/src/Numeric/LinearAlgebra/Util/Convolution.hs index d04c46b..1775f14 100644 --- a/packages/base/src/Numeric/LinearAlgebra/Util/Convolution.hs +++ b/packages/base/src/Numeric/LinearAlgebra/Util/Convolution.hs | |||
@@ -3,9 +3,8 @@ | |||
3 | {- | | 3 | {- | |
4 | Module : Numeric.LinearAlgebra.Util.Convolution | 4 | Module : Numeric.LinearAlgebra.Util.Convolution |
5 | Copyright : (c) Alberto Ruiz 2012 | 5 | Copyright : (c) Alberto Ruiz 2012 |
6 | License : GPL | 6 | License : BSD3 |
7 | 7 | Maintainer : Alberto Ruiz | |
8 | Maintainer : Alberto Ruiz (aruiz at um dot es) | ||
9 | Stability : provisional | 8 | Stability : provisional |
10 | 9 | ||
11 | -} | 10 | -} |
@@ -17,7 +16,7 @@ module Numeric.LinearAlgebra.Util.Convolution( | |||
17 | corr2, conv2, separable | 16 | corr2, conv2, separable |
18 | ) where | 17 | ) where |
19 | 18 | ||
20 | import Numeric.LinearAlgebra | 19 | import Numeric.Container |
21 | 20 | ||
22 | 21 | ||
23 | vectSS :: Element t => Int -> Vector t -> Matrix t | 22 | vectSS :: Element t => Int -> Vector t -> Matrix t |
diff --git a/packages/base/src/Numeric/Matrix.hs b/packages/base/src/Numeric/Matrix.hs index 3478aae..962ee84 100644 --- a/packages/base/src/Numeric/Matrix.hs +++ b/packages/base/src/Numeric/Matrix.hs | |||
@@ -7,12 +7,11 @@ | |||
7 | ----------------------------------------------------------------------------- | 7 | ----------------------------------------------------------------------------- |
8 | -- | | 8 | -- | |
9 | -- Module : Numeric.Matrix | 9 | -- Module : Numeric.Matrix |
10 | -- Copyright : (c) Alberto Ruiz 2010 | 10 | -- Copyright : (c) Alberto Ruiz 2014 |
11 | -- License : GPL-style | 11 | -- License : BSD3 |
12 | -- | 12 | -- |
13 | -- Maintainer : Alberto Ruiz <aruiz@um.es> | 13 | -- Maintainer : Alberto Ruiz |
14 | -- Stability : provisional | 14 | -- Stability : provisional |
15 | -- Portability : portable | ||
16 | -- | 15 | -- |
17 | -- Provides instances of standard classes 'Show', 'Read', 'Eq', | 16 | -- Provides instances of standard classes 'Show', 'Read', 'Eq', |
18 | -- 'Num', 'Fractional', and 'Floating' for 'Matrix'. | 17 | -- 'Num', 'Fractional', and 'Floating' for 'Matrix'. |
diff --git a/packages/base/src/Numeric/Vector.hs b/packages/base/src/Numeric/Vector.hs index 2769cd9..3a425f5 100644 --- a/packages/base/src/Numeric/Vector.hs +++ b/packages/base/src/Numeric/Vector.hs | |||
@@ -7,11 +7,10 @@ | |||
7 | -- | | 7 | -- | |
8 | -- Module : Numeric.Vector | 8 | -- Module : Numeric.Vector |
9 | -- Copyright : (c) Alberto Ruiz 2011 | 9 | -- Copyright : (c) Alberto Ruiz 2011 |
10 | -- License : GPL-style | 10 | -- License : BSD3 |
11 | -- | 11 | -- |
12 | -- Maintainer : Alberto Ruiz <aruiz@um.es> | 12 | -- Maintainer : Alberto Ruiz |
13 | -- Stability : provisional | 13 | -- Stability : provisional |
14 | -- Portability : portable | ||
15 | -- | 14 | -- |
16 | -- Provides instances of standard classes 'Show', 'Read', 'Eq', | 15 | -- Provides instances of standard classes 'Show', 'Read', 'Eq', |
17 | -- 'Num', 'Fractional', and 'Floating' for 'Vector'. | 16 | -- 'Num', 'Fractional', and 'Floating' for 'Vector'. |
diff --git a/packages/hmatrix/src/Numeric/Container.hs b/packages/hmatrix/src/Numeric/Container.hs new file mode 100644 index 0000000..146780d --- /dev/null +++ b/packages/hmatrix/src/Numeric/Container.hs | |||
@@ -0,0 +1,241 @@ | |||
1 | {-# LANGUAGE TypeFamilies #-} | ||
2 | {-# LANGUAGE FlexibleContexts #-} | ||
3 | {-# LANGUAGE FlexibleInstances #-} | ||
4 | {-# LANGUAGE MultiParamTypeClasses #-} | ||
5 | {-# LANGUAGE FunctionalDependencies #-} | ||
6 | {-# LANGUAGE UndecidableInstances #-} | ||
7 | |||
8 | ----------------------------------------------------------------------------- | ||
9 | -- | | ||
10 | -- Module : Numeric.Container | ||
11 | -- Copyright : (c) Alberto Ruiz 2010-14 | ||
12 | -- License : BSD3 | ||
13 | -- Maintainer : Alberto Ruiz | ||
14 | -- Stability : provisional | ||
15 | -- Portability : portable | ||
16 | -- | ||
17 | -- Basic numeric operations on 'Vector' and 'Matrix', including conversion routines. | ||
18 | -- | ||
19 | -- The 'Container' class is used to define optimized generic functions which work | ||
20 | -- on 'Vector' and 'Matrix' with real or complex elements. | ||
21 | -- | ||
22 | -- Some of these functions are also available in the instances of the standard | ||
23 | -- numeric Haskell classes provided by "Numeric.LinearAlgebra". | ||
24 | -- | ||
25 | ----------------------------------------------------------------------------- | ||
26 | {-# OPTIONS_HADDOCK hide #-} | ||
27 | |||
28 | module Numeric.Container ( | ||
29 | -- * Basic functions | ||
30 | module Data.Packed, | ||
31 | konst, build, | ||
32 | linspace, | ||
33 | diag, ident, | ||
34 | ctrans, | ||
35 | -- * Generic operations | ||
36 | Container(..), | ||
37 | -- * Matrix product | ||
38 | Product(..), udot, dot, (◇), | ||
39 | Mul(..), | ||
40 | Contraction(..), | ||
41 | optimiseMult, | ||
42 | mXm,mXv,vXm,LSDiv(..), | ||
43 | outer, kronecker, | ||
44 | -- * Element conversion | ||
45 | Convert(..), | ||
46 | Complexable(), | ||
47 | RealElement(), | ||
48 | |||
49 | RealOf, ComplexOf, SingleOf, DoubleOf, | ||
50 | |||
51 | IndexOf, | ||
52 | module Data.Complex | ||
53 | ) where | ||
54 | |||
55 | import Data.Packed hiding (stepD, stepF, condD, condF, conjugateC, conjugateQ) | ||
56 | import Data.Packed.Numeric | ||
57 | import Data.Complex | ||
58 | import Numeric.LinearAlgebra.Algorithms(Field,linearSolveSVD) | ||
59 | import Data.Monoid(Monoid(mconcat)) | ||
60 | |||
61 | ------------------------------------------------------------------ | ||
62 | |||
63 | {- | Creates a real vector containing a range of values: | ||
64 | |||
65 | >>> linspace 5 (-3,7::Double) | ||
66 | fromList [-3.0,-0.5,2.0,4.5,7.0]@ | ||
67 | |||
68 | >>> linspace 5 (8,2+i) :: Vector (Complex Double) | ||
69 | fromList [8.0 :+ 0.0,6.5 :+ 0.25,5.0 :+ 0.5,3.5 :+ 0.75,2.0 :+ 1.0] | ||
70 | |||
71 | Logarithmic spacing can be defined as follows: | ||
72 | |||
73 | @logspace n (a,b) = 10 ** linspace n (a,b)@ | ||
74 | -} | ||
75 | linspace :: (Container Vector e) => Int -> (e, e) -> Vector e | ||
76 | linspace 0 (a,b) = fromList[(a+b)/2] | ||
77 | linspace n (a,b) = addConstant a $ scale s $ fromList $ map fromIntegral [0 .. n-1] | ||
78 | where s = (b-a)/fromIntegral (n-1) | ||
79 | |||
80 | -------------------------------------------------------- | ||
81 | |||
82 | class Contraction a b c | a b -> c | ||
83 | where | ||
84 | infixl 7 <.> | ||
85 | {- | Matrix product, matrix vector product, and dot product | ||
86 | |||
87 | Examples: | ||
88 | |||
89 | >>> let a = (3><4) [1..] :: Matrix Double | ||
90 | >>> let v = fromList [1,0,2,-1] :: Vector Double | ||
91 | >>> let u = fromList [1,2,3] :: Vector Double | ||
92 | |||
93 | >>> a | ||
94 | (3><4) | ||
95 | [ 1.0, 2.0, 3.0, 4.0 | ||
96 | , 5.0, 6.0, 7.0, 8.0 | ||
97 | , 9.0, 10.0, 11.0, 12.0 ] | ||
98 | |||
99 | matrix × matrix: | ||
100 | |||
101 | >>> disp 2 (a <.> trans a) | ||
102 | 3x3 | ||
103 | 30 70 110 | ||
104 | 70 174 278 | ||
105 | 110 278 446 | ||
106 | |||
107 | matrix × vector: | ||
108 | |||
109 | >>> a <.> v | ||
110 | fromList [3.0,11.0,19.0] | ||
111 | |||
112 | dot product: | ||
113 | |||
114 | >>> u <.> fromList[3,2,1::Double] | ||
115 | 10 | ||
116 | |||
117 | For complex vectors the first argument is conjugated: | ||
118 | |||
119 | >>> fromList [1,i] <.> fromList[2*i+1,3] | ||
120 | 1.0 :+ (-1.0) | ||
121 | |||
122 | >>> fromList [1,i,1-i] <.> complex a | ||
123 | fromList [10.0 :+ 4.0,12.0 :+ 4.0,14.0 :+ 4.0,16.0 :+ 4.0] | ||
124 | |||
125 | -} | ||
126 | (<.>) :: a -> b -> c | ||
127 | |||
128 | |||
129 | instance (Product t, Container Vector t) => Contraction (Vector t) (Vector t) t where | ||
130 | u <.> v = conj u `udot` v | ||
131 | |||
132 | instance Product t => Contraction (Matrix t) (Vector t) (Vector t) where | ||
133 | (<.>) = mXv | ||
134 | |||
135 | instance (Container Vector t, Product t) => Contraction (Vector t) (Matrix t) (Vector t) where | ||
136 | (<.>) v m = (conj v) `vXm` m | ||
137 | |||
138 | instance Product t => Contraction (Matrix t) (Matrix t) (Matrix t) where | ||
139 | (<.>) = mXm | ||
140 | |||
141 | |||
142 | -------------------------------------------------------------------------------- | ||
143 | |||
144 | class Mul a b c | a b -> c where | ||
145 | infixl 7 <> | ||
146 | -- | Matrix-matrix, matrix-vector, and vector-matrix products. | ||
147 | (<>) :: Product t => a t -> b t -> c t | ||
148 | |||
149 | instance Mul Matrix Matrix Matrix where | ||
150 | (<>) = mXm | ||
151 | |||
152 | instance Mul Matrix Vector Vector where | ||
153 | (<>) m v = flatten $ m <> asColumn v | ||
154 | |||
155 | instance Mul Vector Matrix Vector where | ||
156 | (<>) v m = flatten $ asRow v <> m | ||
157 | |||
158 | -------------------------------------------------------------------------------- | ||
159 | |||
160 | class LSDiv c where | ||
161 | infixl 7 <\> | ||
162 | -- | least squares solution of a linear system, similar to the \\ operator of Matlab\/Octave (based on linearSolveSVD) | ||
163 | (<\>) :: Field t => Matrix t -> c t -> c t | ||
164 | |||
165 | instance LSDiv Vector where | ||
166 | m <\> v = flatten (linearSolveSVD m (reshape 1 v)) | ||
167 | |||
168 | instance LSDiv Matrix where | ||
169 | (<\>) = linearSolveSVD | ||
170 | |||
171 | -------------------------------------------------------------------------------- | ||
172 | |||
173 | class Konst e d c | d -> c, c -> d | ||
174 | where | ||
175 | -- | | ||
176 | -- >>> konst 7 3 :: Vector Float | ||
177 | -- fromList [7.0,7.0,7.0] | ||
178 | -- | ||
179 | -- >>> konst i (3::Int,4::Int) | ||
180 | -- (3><4) | ||
181 | -- [ 0.0 :+ 1.0, 0.0 :+ 1.0, 0.0 :+ 1.0, 0.0 :+ 1.0 | ||
182 | -- , 0.0 :+ 1.0, 0.0 :+ 1.0, 0.0 :+ 1.0, 0.0 :+ 1.0 | ||
183 | -- , 0.0 :+ 1.0, 0.0 :+ 1.0, 0.0 :+ 1.0, 0.0 :+ 1.0 ] | ||
184 | -- | ||
185 | konst :: e -> d -> c e | ||
186 | |||
187 | instance Container Vector e => Konst e Int Vector | ||
188 | where | ||
189 | konst = konst' | ||
190 | |||
191 | instance Container Vector e => Konst e (Int,Int) Matrix | ||
192 | where | ||
193 | konst = konst' | ||
194 | |||
195 | -------------------------------------------------------------------------------- | ||
196 | |||
197 | class Build d f c e | d -> c, c -> d, f -> e, f -> d, f -> c, c e -> f, d e -> f | ||
198 | where | ||
199 | -- | | ||
200 | -- >>> build 5 (**2) :: Vector Double | ||
201 | -- fromList [0.0,1.0,4.0,9.0,16.0] | ||
202 | -- | ||
203 | -- Hilbert matrix of order N: | ||
204 | -- | ||
205 | -- >>> let hilb n = build (n,n) (\i j -> 1/(i+j+1)) :: Matrix Double | ||
206 | -- >>> putStr . dispf 2 $ hilb 3 | ||
207 | -- 3x3 | ||
208 | -- 1.00 0.50 0.33 | ||
209 | -- 0.50 0.33 0.25 | ||
210 | -- 0.33 0.25 0.20 | ||
211 | -- | ||
212 | build :: d -> f -> c e | ||
213 | |||
214 | instance Container Vector e => Build Int (e -> e) Vector e | ||
215 | where | ||
216 | build = build' | ||
217 | |||
218 | instance Container Matrix e => Build (Int,Int) (e -> e -> e) Matrix e | ||
219 | where | ||
220 | build = build' | ||
221 | |||
222 | -------------------------------------------------------------------------------- | ||
223 | |||
224 | {- | alternative operator for '(\<.\>)' | ||
225 | |||
226 | x25c7, white diamond | ||
227 | |||
228 | -} | ||
229 | (◇) :: Contraction a b c => a -> b -> c | ||
230 | infixl 7 ◇ | ||
231 | (◇) = (<.>) | ||
232 | |||
233 | -- | dot product: @cdot u v = 'udot' ('conj' u) v@ | ||
234 | dot :: (Container Vector t, Product t) => Vector t -> Vector t -> t | ||
235 | dot u v = udot (conj u) v | ||
236 | |||
237 | -------------------------------------------------------------------------------- | ||
238 | |||
239 | optimiseMult :: Monoid (Matrix t) => [Matrix t] -> Matrix t | ||
240 | optimiseMult = mconcat | ||
241 | |||