update dependencies, move examples etc

1 files changed, 182 insertions, 0 deletions

diff --git a/packages/gsl/src/Numeric/GSL/gsl-ode.c b/packages/gsl/src/Numeric/GSL/gsl-ode.c
new file mode 100644
index 0000000..3f2771b
--- /dev/null
+++ b/packages/gsl/src/Numeric/GSL/gsl-ode.c
@@ -0,0 +1,182 @@
+
+#ifdef GSLODE1
+
+////////////////////////////// ODE V1 //////////////////////////////////////////
+
+#include <gsl/gsl_odeiv.h>
+
+typedef struct {int n; int (*f)(double,int, const double*, int, double *); int (*j)(double,int, const double*, int, int, double*);} Tode;
+
+int odefunc (double t, const double y[], double f[], void *params) { 
+    Tode * P = (Tode*) params;
+    (P->f)(t,P->n,y,P->n,f);
+    return GSL_SUCCESS;
+}
+
+int odejac (double t, const double y[], double *dfdy, double dfdt[], void *params) {
+     Tode * P = ((Tode*) params);
+     (P->j)(t,P->n,y,P->n,P->n,dfdy);
+     int j;
+     for (j=0; j< P->n; j++)
+        dfdt[j] = 0.0;
+     return GSL_SUCCESS;
+}
+
+
+int ode(int method, double h, double eps_abs, double eps_rel,
+        int f(double, int, const double*, int, double*),
+        int jac(double, int, const double*, int, int, double*),
+        KRVEC(xi), KRVEC(ts), RMAT(sol)) {
+
+    const gsl_odeiv_step_type * T;
+
+    switch(method) {
+        case 0 : {T = gsl_odeiv_step_rk2; break; }
+        case 1 : {T = gsl_odeiv_step_rk4; break; }
+        case 2 : {T = gsl_odeiv_step_rkf45; break; }
+        case 3 : {T = gsl_odeiv_step_rkck; break; }
+        case 4 : {T = gsl_odeiv_step_rk8pd; break; }
+        case 5 : {T = gsl_odeiv_step_rk2imp; break; }
+        case 6 : {T = gsl_odeiv_step_rk4imp; break; }
+        case 7 : {T = gsl_odeiv_step_bsimp; break; }
+        case 8 : { printf("Sorry: ODE rk1imp not available in this GSL version\n"); exit(0); }
+        case 9 : { printf("Sorry: ODE msadams not available in this GSL version\n"); exit(0); }
+        case 10: { printf("Sorry: ODE msbdf not available in this GSL version\n"); exit(0); }
+        default: ERROR(BAD_CODE);
+    }
+
+    gsl_odeiv_step * s = gsl_odeiv_step_alloc (T, xin);
+    gsl_odeiv_control * c = gsl_odeiv_control_y_new (eps_abs, eps_rel);
+    gsl_odeiv_evolve * e = gsl_odeiv_evolve_alloc (xin);
+
+    Tode P;
+    P.f = f;
+    P.j = jac;
+    P.n = xin;
+
+    gsl_odeiv_system sys = {odefunc, odejac, xin, &P};
+
+    double t = tsp[0];
+
+    double* y = (double*)calloc(xin,sizeof(double));
+    int i,j;
+    for(i=0; i< xin; i++) {
+        y[i] = xip[i];
+        solp[i] = xip[i];
+    }
+
+       for (i = 1; i < tsn ; i++)
+         {
+           double ti = tsp[i];
+           while (t < ti)
+             {
+               gsl_odeiv_evolve_apply (e, c, s,
+                                       &sys,
+                                       &t, ti, &h,
+                                       y);
+               // if (h < hmin) h = hmin;
+             }
+           for(j=0; j<xin; j++) {
+               solp[i*xin + j] = y[j];
+           }
+         }
+
+    free(y);
+    gsl_odeiv_evolve_free (e);
+    gsl_odeiv_control_free (c);
+    gsl_odeiv_step_free (s);
+    return 0;
+}
+
+#else
+
+///////////////////// ODE V2 ///////////////////////////////////////////////////
+                   
+#include <gsl/gsl_odeiv2.h>
+
+typedef struct {int n; int (*f)(double,int, const double*, int, double *); int (*j)(double,int, const double*, int, int, double*);} Tode;
+
+int odefunc (double t, const double y[], double f[], void *params) { 
+    Tode * P = (Tode*) params;
+    (P->f)(t,P->n,y,P->n,f);
+    return GSL_SUCCESS;
+}
+
+int odejac (double t, const double y[], double *dfdy, double dfdt[], void *params) {
+     Tode * P = ((Tode*) params);
+     (P->j)(t,P->n,y,P->n,P->n,dfdy);
+     int j;
+     for (j=0; j< P->n; j++)
+        dfdt[j] = 0.0;
+     return GSL_SUCCESS;
+}
+
+
+int ode(int method, double h, double eps_abs, double eps_rel,
+        int f(double, int, const double*, int, double*),
+        int jac(double, int, const double*, int, int, double*),
+        KRVEC(xi), KRVEC(ts), RMAT(sol)) {
+
+    const gsl_odeiv2_step_type * T;
+
+    switch(method) {
+        case 0 : {T = gsl_odeiv2_step_rk2; break; }
+        case 1 : {T = gsl_odeiv2_step_rk4; break; }
+        case 2 : {T = gsl_odeiv2_step_rkf45; break; }
+        case 3 : {T = gsl_odeiv2_step_rkck; break; }
+        case 4 : {T = gsl_odeiv2_step_rk8pd; break; }
+        case 5 : {T = gsl_odeiv2_step_rk2imp; break; }
+        case 6 : {T = gsl_odeiv2_step_rk4imp; break; }
+        case 7 : {T = gsl_odeiv2_step_bsimp; break; }
+        case 8 : {T = gsl_odeiv2_step_rk1imp; break; }
+        case 9 : {T = gsl_odeiv2_step_msadams; break; }
+        case 10: {T = gsl_odeiv2_step_msbdf; break; }
+        default: ERROR(BAD_CODE);
+    }
+
+    Tode P;
+    P.f = f;
+    P.j = jac;
+    P.n = xin;
+
+    gsl_odeiv2_system sys = {odefunc, odejac, xin, &P};
+
+    gsl_odeiv2_driver * d =
+         gsl_odeiv2_driver_alloc_y_new (&sys, T, h, eps_abs, eps_rel);
+
+    double t = tsp[0];
+
+    double* y = (double*)calloc(xin,sizeof(double));
+    int i,j;
+    int status=0;
+    for(i=0; i< xin; i++) {
+        y[i] = xip[i];
+        solp[i] = xip[i];
+    }
+
+       for (i = 1; i < tsn ; i++)
+         {
+           double ti = tsp[i];
+           
+           status = gsl_odeiv2_driver_apply (d, &t, ti, y);
+     
+           if (status != GSL_SUCCESS) {
+                  printf ("error in ode, return value=%d\n", status);
+                  break;
+                }
+
+//           printf ("%.5e %.5e %.5e\n", t, y[0], y[1]);
+           
+           for(j=0; j<xin; j++) {
+               solp[i*xin + j] = y[j];
+           }
+         }
+
+    free(y);
+    gsl_odeiv2_driver_free (d);
+    
+    return status;
+}
+
+#endif
+