update dependencies, move examples etc

1 files changed, 0 insertions, 46 deletions

diff --git a/packages/hmatrix/examples/pca1.hs b/packages/hmatrix/examples/pca1.hs
deleted file mode 100644
index a11eba9..0000000
--- a/packages/hmatrix/examples/pca1.hs
+++ /dev/null
@@ -1,46 +0,0 @@
--- Principal component analysis
-
-import Numeric.LinearAlgebra
-import System.Directory(doesFileExist)
-import System.Process(system)
-import Control.Monad(when)
-
-type Vec = Vector Double
-type Mat = Matrix Double
-
-
--- Vector with the mean value of the columns of a matrix
-mean a = constant (recip . fromIntegral . rows $ a) (rows a) <> a
-
--- covariance matrix of a list of observations stored as rows
-cov x = (trans xc <> xc) / fromIntegral (rows x - 1)
-    where xc = x - asRow (mean x)
-
-
--- creates the compression and decompression functions from the desired number of components
-pca :: Int -> Mat -> (Vec -> Vec , Vec -> Vec)
-pca n dataSet = (encode,decode)
-  where
-    encode x = vp <> (x - m)
-    decode x = x <> vp + m
-    m = mean dataSet
-    c = cov dataSet
-    (_,v) = eigSH' c
-    vp = takeRows n (trans v)
-
-norm = pnorm PNorm2
-
-main = do
-    ok <- doesFileExist ("mnist.txt")
-    when (not ok)  $ do
-        putStrLn "\nTrying to download test datafile..."
-        system("wget -nv http://dis.um.es/~alberto/material/sp/mnist.txt.gz")
-        system("gunzip mnist.txt.gz")
-        return ()
-    m <- loadMatrix "mnist.txt" -- fromFile "mnist.txt" (5000,785)
-    let xs = takeColumns (cols m -1) m -- the last column is the digit type (class label)
-    let x = toRows xs !! 4  -- an arbitrary test Vec
-    let (pe,pd) = pca 10 xs
-    let y = pe x
-    print y  -- compressed version
-    print $ norm (x - pd y) / norm x --reconstruction quality