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|
-----------------------------------------------------------------------------
-- |
-- Module : Numeric.GSL.LinearAlgebra
-- Copyright : (c) Alberto Ruiz 2007-14
-- License : GPL
-- Maintainer : Alberto Ruiz
-- Stability : provisional
--
-----------------------------------------------------------------------------
module Numeric.GSL.LinearAlgebra (
RandDist(..), randomVector,
saveMatrix,
fwriteVector, freadVector, fprintfVector, fscanfVector,
fileDimensions, loadMatrix, fromFile
) where
import Numeric.LinearAlgebra.HMatrix hiding (RandDist,randomVector,saveMatrix,loadMatrix)
import Numeric.GSL.Internal hiding (TV,TM,TCV,TCM)
import Foreign.Marshal.Alloc(free)
import Foreign.Ptr(Ptr)
import Foreign.C.Types
import Foreign.C.String(newCString)
import System.IO.Unsafe(unsafePerformIO)
import System.Process(readProcess)
fromei x = fromIntegral (fromEnum x) :: CInt
-----------------------------------------------------------------------
data RandDist = Uniform -- ^ uniform distribution in [0,1)
| Gaussian -- ^ normal distribution with mean zero and standard deviation one
deriving Enum
-- | Obtains a vector of pseudorandom elements from the the mt19937 generator in GSL, with a given seed. Use randomIO to get a random seed.
randomVector :: Int -- ^ seed
-> RandDist -- ^ distribution
-> Int -- ^ vector size
-> Vector Double
randomVector seed dist n = unsafePerformIO $ do
r <- createVector n
(r `applyRaw` id) (c_random_vector (fi seed) ((fi.fromEnum) dist)) #|"randomVector"
return r
foreign import ccall unsafe "random_vector" c_random_vector :: CInt -> CInt -> TV
--------------------------------------------------------------------------------
-- | Saves a matrix as 2D ASCII table.
saveMatrix :: FilePath
-> String -- ^ format (%f, %g, %e)
-> Matrix Double
-> IO ()
saveMatrix filename fmt m = do
charname <- newCString filename
charfmt <- newCString fmt
let o = if orderOf m == RowMajor then 1 else 0
(m `applyRaw` id) (matrix_fprintf charname charfmt o) #|"matrix_fprintf"
free charname
free charfmt
foreign import ccall unsafe "matrix_fprintf" matrix_fprintf :: Ptr CChar -> Ptr CChar -> CInt -> TM
--------------------------------------------------------------------------------
-- | Loads a vector from an ASCII file (the number of elements must be known in advance).
fscanfVector :: FilePath -> Int -> IO (Vector Double)
fscanfVector filename n = do
charname <- newCString filename
res <- createVector n
(res `applyRaw` id) (gsl_vector_fscanf charname) #|"gsl_vector_fscanf"
free charname
return res
foreign import ccall unsafe "vector_fscanf" gsl_vector_fscanf:: Ptr CChar -> TV
-- | Saves the elements of a vector, with a given format (%f, %e, %g), to an ASCII file.
fprintfVector :: FilePath -> String -> Vector Double -> IO ()
fprintfVector filename fmt v = do
charname <- newCString filename
charfmt <- newCString fmt
(v `applyRaw` id) (gsl_vector_fprintf charname charfmt) #|"gsl_vector_fprintf"
free charname
free charfmt
foreign import ccall unsafe "vector_fprintf" gsl_vector_fprintf :: Ptr CChar -> Ptr CChar -> TV
-- | Loads a vector from a binary file (the number of elements must be known in advance).
freadVector :: FilePath -> Int -> IO (Vector Double)
freadVector filename n = do
charname <- newCString filename
res <- createVector n
(res `applyRaw` id) (gsl_vector_fread charname) #| "gsl_vector_fread"
free charname
return res
foreign import ccall unsafe "vector_fread" gsl_vector_fread:: Ptr CChar -> TV
-- | Saves the elements of a vector to a binary file.
fwriteVector :: FilePath -> Vector Double -> IO ()
fwriteVector filename v = do
charname <- newCString filename
(v `applyRaw` id) (gsl_vector_fwrite charname) #|"gsl_vector_fwrite"
free charname
foreign import ccall unsafe "vector_fwrite" gsl_vector_fwrite :: Ptr CChar -> TV
type PD = Ptr Double --
type TV = CInt -> PD -> IO CInt --
type TM = CInt -> CInt -> PD -> IO CInt --
--------------------------------------------------------------------------------
{- | obtains the number of rows and columns in an ASCII data file
(provisionally using unix's wc).
-}
fileDimensions :: FilePath -> IO (Int,Int)
fileDimensions fname = do
wcres <- readProcess "wc" ["-w",fname] ""
contents <- readFile fname
let tot = read . head . words $ wcres
c = length . head . dropWhile null . map words . lines $ contents
if tot > 0
then return (tot `div` c, c)
else return (0,0)
-- | Loads a matrix from an ASCII file formatted as a 2D table.
loadMatrix :: FilePath -> IO (Matrix Double)
loadMatrix file = fromFile file =<< fileDimensions file
-- | Loads a matrix from an ASCII file (the number of rows and columns must be known in advance).
fromFile :: FilePath -> (Int,Int) -> IO (Matrix Double)
fromFile filename (r,c) = reshape c `fmap` fscanfVector filename (r*c)
|
