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authorAlberto Ruiz <aruiz@um.es>2011-12-26 11:40:04 +0100
committerAlberto Ruiz <aruiz@um.es>2011-12-26 11:40:04 +0100
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1
2# [hmatrix][hmatrix2] installation
3
4This package requires the [Glasgow Haskell Compiler](http://www.haskell.org/ghc/index.html) ghc >= 6.10, and [cabal-install](http://www.haskell.org/haskellwiki/Cabal-Install), conveniently available in the [Haskell Platform](http://hackage.haskell.org/platform), and the development packages for [GSL](http://www.gnu.org/software/gsl) and BLAS/[LAPACK](http://www.netlib.org/lapack). (The graphical functions also require **gnuplot** and **imagemagick**.)
5
6[hmatrix]: http://code.haskell.org/hmatrix
7[hmatrix2]: http://perception.inf.um.es/hmatrix
8
9
10## Linux ##################################################
11
12
13Ubuntu/Debian:
14
15 $ sudo apt-get install libgsl0-dev liblapack-dev
16 $ cabal install hmatrix
17
18Arch Linux: If the automatic installation from Hackage fails, install atlas-lapack and gsl, unpack the source, change the build-type to Simple in hmatrix.cabal (line 28) and add extra-libraries: gsl lapack (line 194).
19
20Other distributions may require additional libraries. They can be given in a **--configure-option**.
21
22## Mac OS/X ###############################################
23
24
25GSL must be installed via MacPorts:
26
27 $ sudo port install gsl-devel +universal
28 $ cabal install hmatrix
29
30(Contributed by Heinrich Apfelmus and Torsten Kemps-Benedix).
31
32## Windows ###############################################
33
34We use this [GSL binary](http://www.miscdebris.net/blog/2009/04/20/mingw-345-binaries-of-gnu-scientific-library-112-for-use-with-mingw-and-visual-c/), and blas/lapack dlls built with g77 (contributed by Gilberto Camara). All required files are in [gsl-lapack-windows.zip][winpack].
35
36
371) Install the Haskell Platform (tested on 2011.2.0.1)
38
39 > cabal update
40
412) Download and unzip the following file into a stable folder %GSL%
42
43 http://perception.inf.um.es/hmatrix/gsl-lapack-windows.zip
44
453.a) In a msys shell the installation should be fully automatic:
46
47 $ cabal install hmatrix --extra-lib-dir=${GSL} --extra-include-dir=${GSL}
48
493.b) Alternatively, in a normal windows cmd:
50
51 > cabal unpack hmatrix
52
53 Edit hmatrix.cabal, in line 28 change build-type to "Simple", and then
54
55 > cabal install --extra-lib-dir=%GSL% --extra-include-dir=%GSL%
56
57 It may be necessary to put the dlls in the search path.
58
59
60NOTE: The examples using graphics do not yet work in windows.
61
62[install]: http://code.haskell.org/hmatrix/INSTALL
63[install2]: http://patch-tag.com/r/aruiz/hmatrix/snapshot/current/content/pretty/INSTALL
64[winpack]: http://perception.inf.um.es/hmatrix/gsl-lapack-windows.zip
65
66- - -
67
68## Tests ###############################################
69
70After installation we must verify that the library works as expected:
71
72 $ cabal install hmatrix-tests --enable-tests
73 $ ghci
74 > Numeric.LinearAlgebra.Tests.runTests 20
75 OK, passed 100 tests.
76 OK, passed 100 tests.
77 ... etc...
78
79If you get any failure please run lapack's own tests to confirm that your version is not broken. For instance, in ubuntu 9.04, **libatlas-sse2** does not work (see this [bug report](https://bugs.launchpad.net/ubuntu/+source/atlas/+bug/368478)). If your lapack library is ok but hmatrix's tests fail please send a bug report!
80
81- - -
82
83## Optimized BLAS/LAPACK ##########################################
84
85I have successfully tested ATLAS and MKL on Linux.
86
87### [ATLAS](http://math-atlas.sourceforge.net/) ####################
88
89In Ubuntu >= 9.04 we need:
90
91 $ sudo apt-get install libatlas-base-dev
92
93In older Ubuntu/Debian versions we needed:
94
95 $ sudo apt-get install refblas3-dev lapack3-dev atlas3-base-dev
96
97We may use a version (sse2, 3dnow, etc.) optimized for the machine.
98
99### Intel's MKL ###############################################
100
101There is a free noncommercial download available from Intel's website. To use it I have added the following lines in my .bashrc configuration file:
102
103 export LD_LIBRARY_PATH=/path/to/mkl/lib/arch
104 export LIBRARY_PATH=/path/to/mkl/lib/arch
105
106where arch = 32 or em64t.
107
108The library must be installed with the -fmkl flag:
109
110 $ cabal install hmatrix -fmkl
111
112