linear algebra moved

1 files changed, 115 insertions, 0 deletions

diff --git a/packages/base/src/Numeric/LinearAlgebra/Util/Convolution.hs b/packages/base/src/Numeric/LinearAlgebra/Util/Convolution.hs
new file mode 100644
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+++ b/packages/base/src/Numeric/LinearAlgebra/Util/Convolution.hs
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+{-# LANGUAGE FlexibleContexts #-}
+-----------------------------------------------------------------------------
+{- |
+Module      :  Numeric.LinearAlgebra.Util.Convolution
+Copyright   :  (c) Alberto Ruiz 2012
+License     :  GPL
+
+Maintainer  :  Alberto Ruiz (aruiz at um dot es)
+Stability   :  provisional
+
+-}
+-----------------------------------------------------------------------------
+{-# OPTIONS_HADDOCK hide #-}
+
+module Numeric.LinearAlgebra.Util.Convolution(
+   corr, conv, corrMin,
+   corr2, conv2, separable
+) where
+
+import Numeric.LinearAlgebra
+
+
+vectSS :: Element t => Int -> Vector t -> Matrix t
+vectSS n v = fromRows [ subVector k n v | k <- [0 .. dim v - n] ]
+
+
+corr :: Product t => Vector t -- ^ kernel
+                  -> Vector t -- ^ source
+                  -> Vector t
+{- ^ correlation
+
+>>> corr (fromList[1,2,3]) (fromList [1..10])
+fromList [14.0,20.0,26.0,32.0,38.0,44.0,50.0,56.0]
+
+-}
+corr ker v | dim ker <= dim v = vectSS (dim ker) v <> ker
+           | otherwise = error $ "corr: dim kernel ("++show (dim ker)++") > dim vector ("++show (dim v)++")"
+
+
+conv :: (Product t, Num t) => Vector t -> Vector t -> Vector t
+{- ^ convolution ('corr' with reversed kernel and padded input, equivalent to polynomial product)
+
+>>> conv (fromList[1,1]) (fromList [-1,1])
+fromList [-1.0,0.0,1.0]
+
+-}
+conv ker v = corr ker' v'
+  where
+    ker' = (flatten.fliprl.asRow) ker
+    v' | dim ker > 1 = vjoin [z,v,z]
+       | otherwise   = v
+    z = constant 0 (dim ker -1)
+
+corrMin :: (Container Vector t, RealElement t, Product t)
+        => Vector t
+        -> Vector t
+        -> Vector t
+-- ^ similar to 'corr', using 'min' instead of (*)
+corrMin ker v = minEvery ss (asRow ker) <> ones
+  where
+    minEvery a b = cond a b a a b
+    ss = vectSS (dim ker) v
+    ones = konst 1 (dim ker)
+
+
+
+matSS :: Element t => Int -> Matrix t -> [Matrix t]
+matSS dr m = map (reshape c) [ subVector (k*c) n v | k <- [0 .. r - dr] ]
+  where
+    v = flatten m
+    c = cols m
+    r = rows m
+    n = dr*c
+
+
+corr2 :: Product a => Matrix a -> Matrix a -> Matrix a
+-- ^ 2D correlation
+corr2 ker mat = dims
+              . concatMap (map (udot ker' . flatten) . matSS c . trans)
+              . matSS r $ mat
+  where
+    r = rows ker
+    c = cols ker
+    ker' = flatten (trans ker)
+    rr = rows mat - r + 1
+    rc = cols mat - c + 1
+    dims | rr > 0 && rc > 0 = (rr >< rc)
+         | otherwise = error $ "corr2: dim kernel ("++sz ker++") > dim matrix ("++sz mat++")"
+    sz m = show (rows m)++"x"++show (cols m)
+
+conv2 :: (Num a, Product a, Container Vector a) => Matrix a -> Matrix a -> Matrix a
+-- ^ 2D convolution
+conv2 k m = corr2 (fliprl . flipud $ k) pm
+  where
+    pm | r == 0 && c == 0 = m
+       | r == 0           = fromBlocks [[z3,m,z3]]
+       |           c == 0 = fromBlocks [[z2],[m],[z2]]
+       | otherwise        = fromBlocks [[z1,z2,z1]
+                                       ,[z3, m,z3]
+                                       ,[z1,z2,z1]]
+    r = rows k - 1
+    c = cols k - 1
+    h = rows m
+    w = cols m
+    z1 = konst 0 (r,c)
+    z2 = konst 0 (r,w)
+    z3 = konst 0 (h,c)
+
+-- TODO: could be simplified using future empty arrays
+
+
+separable :: Element t => (Vector t -> Vector t) -> Matrix t -> Matrix t
+-- ^ matrix computation implemented as separated vector operations by rows and columns.
+separable f = fromColumns . map f . toColumns . fromRows . map f . toRows
+