path: root/lib/Data/Packed/Matrix.hs

{-# OPTIONS_GHC -fglasgow-exts #-}
-----------------------------------------------------------------------------
-- |
-- Module      :  Data.Packed.Matrix
-- Copyright   :  (c) Alberto Ruiz 2007
-- License     :  GPL-style
--
-- Maintainer  :  Alberto Ruiz <aruiz@um.es>
-- Stability   :  provisional
-- Portability :  portable
--
-- A Matrix representation suitable for numerical computations using LAPACK and GSL.
--
-----------------------------------------------------------------------------

module Data.Packed.Matrix (
    Element,
    Matrix,rows,cols,
    (><),
    trans,
    reshape, flatten,
    fromLists, toLists,
    (@@>),
    asRow, asColumn,
    fromRows, toRows, fromColumns, toColumns,
    fromBlocks, repmat,
    flipud, fliprl,
    subMatrix, takeRows, dropRows, takeColumns, dropColumns,
    extractRows,
    ident, diag, diagRect, takeDiag,
    liftMatrix, liftMatrix2,
    format, readMatrix, fromFile, fromArray2D
) where

import Data.Packed.Internal
import qualified Data.Packed.ST as ST
import Data.Packed.Vector
import Data.List(transpose,intersperse)
import Data.Array

-- | creates a matrix from a vertical list of matrices
joinVert :: Element t => [Matrix t] -> Matrix t
joinVert ms = case common cols ms of
    Nothing -> error "joinVert on matrices with different number of columns"
    Just c  -> reshape c $ join (map flatten ms)

-- | creates a matrix from a horizontal list of matrices
joinHoriz :: Element t => [Matrix t] -> Matrix t
joinHoriz ms = trans. joinVert . map trans $ ms

{- | Creates a matrix from blocks given as a list of lists of matrices:

@\> let a = 'diag' $ 'fromList' [5,7,2]
\> let b = 'reshape' 4 $ 'constant' (-1) 12
\> fromBlocks [[a,b],[b,a]]
(6><7)
 [  5.0,  0.0,  0.0, -1.0, -1.0, -1.0, -1.0
 ,  0.0,  7.0,  0.0, -1.0, -1.0, -1.0, -1.0
 ,  0.0,  0.0,  2.0, -1.0, -1.0, -1.0, -1.0
 , -1.0, -1.0, -1.0, -1.0,  5.0,  0.0,  0.0
 , -1.0, -1.0, -1.0, -1.0,  0.0,  7.0,  0.0
 , -1.0, -1.0, -1.0, -1.0,  0.0,  0.0,  2.0 ]@
-}
fromBlocks :: Element t => [[Matrix t]] -> Matrix t
fromBlocks = joinVert . map joinHoriz 

-- | Reverse rows 
flipud :: Element t => Matrix t -> Matrix t
flipud m = fromRows . reverse . toRows $ m

-- | Reverse columns
fliprl :: Element t => Matrix t -> Matrix t
fliprl m = fromColumns . reverse . toColumns $ m

------------------------------------------------------------

-- | Creates a square matrix with a given diagonal.
diag :: Element a => Vector a -> Matrix a
diag v = ST.runSTMatrix $ do
    let d = dim v
    m <- ST.newMatrix 0 d d
    mapM_ (\k -> ST.writeMatrix m k k (v@>k)) [0..d-1]
    return m

{- | creates a rectangular diagonal matrix

@> diagRect (constant 5 3) 3 4 :: Matrix Double
(3><4)
 [ 5.0, 0.0, 0.0, 0.0
 , 0.0, 5.0, 0.0, 0.0
 , 0.0, 0.0, 5.0, 0.0 ]@
-}
diagRect :: (Element t, Num t) => Vector t -> Int -> Int -> Matrix t
diagRect v r c
    | dim v < min r c = error "diagRect called with dim v < min r c"
    | otherwise = ST.runSTMatrix $ do
        m <- ST.newMatrix 0 r c
        let d = min r c
        mapM_ (\k -> ST.writeMatrix m k k (v@>k)) [0..d-1]
        return m

-- | extracts the diagonal from a rectangular matrix
takeDiag :: (Element t) => Matrix t -> Vector t
takeDiag m = fromList [flatten m `at` (k*cols m+k) | k <- [0 .. min (rows m) (cols m) -1]]

-- | creates the identity matrix of given dimension
ident :: Element a => Int -> Matrix a
ident n = diag (constant 1 n)

------------------------------------------------------------

{- | An easy way to create a matrix:

@\> (2><3)[1..6]
(2><3)
 [ 1.0, 2.0, 3.0
 , 4.0, 5.0, 6.0 ]@

This is the format produced by the instances of Show (Matrix a), which
can also be used for input.
-}
(><) :: (Element a) => Int -> Int -> [a] -> Matrix a
r >< c = f where
    f l | dim v == r*c = matrixFromVector RowMajor c v
        | otherwise    = error $ "inconsistent list size = "
                                 ++show (dim v) ++" in ("++show r++"><"++show c++")"
        where v = fromList l

----------------------------------------------------------------

-- | Creates a matrix with the first n rows of another matrix
takeRows :: Element t => Int -> Matrix t -> Matrix t
takeRows n mt = subMatrix (0,0) (n, cols mt) mt
-- | Creates a copy of a matrix without the first n rows
dropRows :: Element t => Int -> Matrix t -> Matrix t
dropRows n mt = subMatrix (n,0) (rows mt - n, cols mt) mt
-- |Creates a matrix with the first n columns of another matrix
takeColumns :: Element t => Int -> Matrix t -> Matrix t
takeColumns n mt = subMatrix (0,0) (rows mt, n) mt
-- | Creates a copy of a matrix without the first n columns
dropColumns :: Element t => Int -> Matrix t -> Matrix t
dropColumns n mt = subMatrix (0,n) (rows mt, cols mt - n) mt

----------------------------------------------------------------

{- | Creates a 'Matrix' from a list of lists (considered as rows).

@\> fromLists [[1,2],[3,4],[5,6]]
(3><2)
 [ 1.0, 2.0
 , 3.0, 4.0
 , 5.0, 6.0 ]@
-}
fromLists :: Element t => [[t]] -> Matrix t
fromLists = fromRows . map fromList

-- | creates a 1-row matrix from a vector
asRow :: Element a => Vector a -> Matrix a
asRow v = reshape (dim v) v

-- | creates a 1-column matrix from a vector
asColumn :: Element a => Vector a -> Matrix a
asColumn v = reshape 1 v

-----------------------------------------------------

fromArray2D :: (Element e) => Array (Int, Int) e -> Matrix e
fromArray2D m = (r><c) (elems m)
    where ((r0,c0),(r1,c1)) = bounds m
          r = r1-r0+1
          c = c1-c0+1

------------------------------------------------------
{-
-- shows a Double with n digits after the decimal point    
shf :: (RealFloat a) => Int -> a -> String     
shf dec n | abs n < 1e-10 = "0."
          | abs (n - (fromIntegral.round $ n)) < 1e-10 = show (round n) ++"."
          | otherwise = showGFloat (Just dec) n ""    
-- shows a Complex Double as a pair, with n digits after the decimal point    
shfc n z@ (a:+b) 
    | magnitude z <1e-10 = "0."
    | abs b < 1e-10 = shf n a
    | abs a < 1e-10 = shf n b ++"i"
    | b > 0         = shf n a ++"+"++shf n b ++"i"
    | otherwise     = shf n a ++shf n b ++"i"         

-}

dsp' :: String -> [[String]] -> String
dsp' sep as = unlines . map unwords' $ transpose mtp where 
    mt = transpose as
    longs = map (maximum . map length) mt
    mtp = zipWith (\a b -> map (pad a) b) longs mt
    pad n str = replicate (n - length str) ' ' ++ str
    unwords' = concat . intersperse sep

{- | Creates a string from a matrix given a separator and a function to show each entry. Using
this function the user can easily define any desired display function:

@import Text.Printf(printf)@

@disp = putStrLn . format \"  \" (printf \"%.2f\")@

-}
format :: (Element t) => String -> (t -> String) -> Matrix t -> String
format sep f m = dsp' sep . map (map f) . toLists $ m

{-
disp m f = putStrLn $ "matrix ("++show (rows m) ++"x"++ show (cols m) ++")\n"++format " | " f m

dispR :: Int -> Matrix Double -> IO ()
dispR d m = disp m (shf d)

dispC :: Int -> Matrix (Complex Double) -> IO ()
dispC d m = disp m (shfc d)
-}

-- | creates a matrix from a table of numbers.
readMatrix :: String -> Matrix Double
readMatrix = fromLists . map (map read). map words . filter (not.null) . lines

-- | rearranges the rows of a matrix according to the order given in a list of integers. 
extractRows :: Element t => [Int] -> Matrix t -> Matrix t
extractRows l m = fromRows $ extract (toRows $ m) l
    where extract l' is = [l'!!i |i<-is]

{- | creates matrix by repetition of a matrix a given number of rows and columns

@> repmat (ident 2) 2 3 :: Matrix Double
(4><6)
 [ 1.0, 0.0, 1.0, 0.0, 1.0, 0.0
 , 0.0, 1.0, 0.0, 1.0, 0.0, 1.0
 , 1.0, 0.0, 1.0, 0.0, 1.0, 0.0
 , 0.0, 1.0, 0.0, 1.0, 0.0, 1.0 ]@

-}
repmat :: (Element t) => Matrix t -> Int -> Int -> Matrix t
repmat m r c = fromBlocks $ partit c $ replicate (r*c) m