withMatrix

9 files changed, 91 insertions, 57 deletions

diff --git a/lib/Numeric/GSL/Differentiation.hs b/lib/Numeric/GSL/Differentiation.hs
index e7fea92..09236bd 100644
--- a/lib/Numeric/GSL/Differentiation.hs
+++ b/lib/Numeric/GSL/Differentiation.hs
@@ -35,7 +35,7 @@ derivGen c h f x = unsafePerformIO $ do
     r <- malloc
     e <- malloc
     fp <- mkfun (\x _ -> f x) 
-    c_deriv c fp x h r e // check "deriv" []
+    c_deriv c fp x h r e // check "deriv"
     vr <- peek r
     ve <- peek e
     let result = (vr,ve)
diff --git a/lib/Numeric/GSL/Fourier.hs b/lib/Numeric/GSL/Fourier.hs
index e975fbf..4b08625 100644
--- a/lib/Numeric/GSL/Fourier.hs
+++ b/lib/Numeric/GSL/Fourier.hs
@@ -26,7 +26,8 @@ import Foreign
 
 genfft code v = unsafePerformIO $ do
     r <- createVector (dim v)
-    c_fft code // vec v // vec r // check "fft" [v]
+    ww2 withVector v withVector r $ \ v r ->
+        c_fft code // v // r // check "fft"
     return r
 
 foreign import ccall "gsl-aux.h fft" c_fft ::  Int -> TCVCV
diff --git a/lib/Numeric/GSL/Integration.hs b/lib/Numeric/GSL/Integration.hs
index d756417..747b34c 100644
--- a/lib/Numeric/GSL/Integration.hs
+++ b/lib/Numeric/GSL/Integration.hs
@@ -44,7 +44,7 @@ integrateQAGS prec n f a b = unsafePerformIO $ do
     r <- malloc
     e <- malloc
     fp <- mkfun (\x _ -> f x) 
-    c_integrate_qags fp a b prec n r e // check "integrate_qags" []
+    c_integrate_qags fp a b prec n r e // check "integrate_qags"
     vr <- peek r
     ve <- peek e
     let result = (vr,ve)
@@ -75,7 +75,7 @@ integrateQNG prec f a b = unsafePerformIO $ do
     r <- malloc
     e <- malloc
     fp <- mkfun (\x _ -> f x) 
-    c_integrate_qng fp a b prec r e  // check "integrate_qng" []
+    c_integrate_qng fp a b prec r e  // check "integrate_qng"
     vr <- peek r
     ve <- peek e
     let result = (vr,ve)
diff --git a/lib/Numeric/GSL/Matrix.hs b/lib/Numeric/GSL/Matrix.hs
index e803c53..09a0be4 100644
--- a/lib/Numeric/GSL/Matrix.hs
+++ b/lib/Numeric/GSL/Matrix.hs
@@ -51,7 +51,8 @@ eigSg' m
     | otherwise = unsafePerformIO $ do
         l <- createVector r
         v <- createMatrix RowMajor r r
-        c_eigS // matc m // vec l // matc v // check "eigSg" [cdat m]
+        ww3 withMatrix m withVector l withMatrix v $ \m l v ->
+            c_eigS // m // l // v // check "eigSg"
         return (l,v)
   where r = rows m
 foreign import ccall "gsl-aux.h eigensystemR" c_eigS :: TMVM
@@ -84,7 +85,8 @@ eigHg' m
     | otherwise = unsafePerformIO $ do
         l <- createVector r
         v <- createMatrix RowMajor r r
-        c_eigH // matc m // vec l // matc v // check "eigHg" [cdat m]
+        ww3 withMatrix m withVector l withMatrix v $ \m l v ->
+            c_eigH // m // l // v // check "eigHg"
         return (l,v)
   where r = rows m
 foreign import ccall "gsl-aux.h eigensystemC" c_eigH :: TCMVCM
@@ -120,7 +122,8 @@ svd' x = unsafePerformIO $ do
     u <- createMatrix RowMajor r c
     s <- createVector c
     v <- createMatrix RowMajor c c
-    c_svd // matc x // matc u // vec s // matc v // check "svdg" [cdat x]
+    ww4 withMatrix x withMatrix u withVector s withMatrix v $ \x u s v ->
+        c_svd // x // u // s // v // check "svdg"
     return (u,s,v)
   where r = rows x
         c = cols x
@@ -149,7 +152,8 @@ qr = qr' . cmat
 qr' x = unsafePerformIO $ do
     q <- createMatrix RowMajor r r
     rot <- createMatrix RowMajor r c
-    c_qr // matc x // matc q // matc rot // check "qr" [cdat x]
+    ww3 withMatrix x withMatrix q withMatrix rot $ \x q rot ->
+        c_qr // x // q // rot // check "qr"
     return (q,rot)
   where r = rows x
         c = cols x
@@ -161,7 +165,8 @@ qrPacked = qrPacked' . cmat
 qrPacked' x = unsafePerformIO $ do
     qr <- createMatrix RowMajor r c
     tau <- createVector (min r c)
-    c_qrPacked // matc x // matc qr // vec tau // check "qrUnpacked" [cdat x]
+    ww3 withMatrix x withMatrix qr withVector tau $ \x qr tau ->
+        c_qrPacked // x // qr // tau // check "qrUnpacked"
     return (qr,tau)
   where r = rows x
         c = cols x
@@ -172,9 +177,10 @@ unpackQR (qr,tau) = unpackQR' (cmat qr, tau)
 
 unpackQR' (qr,tau) = unsafePerformIO $ do
     q <- createMatrix RowMajor r r
-    rot <- createMatrix RowMajor r c
-    c_qrUnpack // matc qr // vec tau // matc q // matc rot // check "qrUnpack" [cdat qr,tau]
-    return (q,rot)
+    res <- createMatrix RowMajor r c
+    ww4 withMatrix qr withVector tau withMatrix q withMatrix res $ \qr tau q res ->
+        c_qrUnpack // qr // tau // q // res // check "qrUnpack"
+    return (q,res)
   where r = rows qr
         c = cols qr
 foreign import ccall "gsl-aux.h QRunpack" c_qrUnpack :: TMVMM
@@ -196,20 +202,22 @@ cholR :: Matrix Double -> Matrix Double
 cholR = cholR' . cmat
 
 cholR' x = unsafePerformIO $ do
-    res <- createMatrix RowMajor r r
-    c_cholR // matc x // matc res // check "cholR" [cdat x]
-    return res
-  where r = rows x
+    r <- createMatrix RowMajor n n
+    ww2 withMatrix x withMatrix r $ \x r ->
+        c_cholR // x // r // check "cholR"
+    return r
+  where n = rows x
 foreign import ccall "gsl-aux.h cholR" c_cholR :: TMM
 
 cholC :: Matrix (Complex Double) -> Matrix (Complex Double)
 cholC = cholC' . cmat
 
 cholC' x = unsafePerformIO $ do
-    res <- createMatrix RowMajor r r
-    c_cholC // matc x // matc res // check "cholC" [cdat x]
-    return res
-  where r = rows x
+    r <- createMatrix RowMajor n n
+    ww2 withMatrix x withMatrix r $ \x r ->
+        c_cholC // x // r // check "cholC"
+    return r
+  where n = rows x
 foreign import ccall "gsl-aux.h cholC" c_cholC :: TCMCM
 
 
@@ -223,7 +231,8 @@ luSolveR a b = luSolveR' (cmat a) (cmat b)
 luSolveR' a b
     | n1==n2 && n1==r = unsafePerformIO $ do
         s <- createMatrix RowMajor r c
-        c_luSolveR // matc a // matc b // matc s // check "luSolveR" [cdat a, cdat b]
+        ww3 withMatrix a withMatrix b withMatrix s $ \ a b s ->
+            c_luSolveR // a // b // s // check "luSolveR"
         return s
     | otherwise = error "luSolveR of nonsquare matrix"
   where n1 = rows a
@@ -240,7 +249,8 @@ luSolveC a b = luSolveC' (cmat a) (cmat b)
 luSolveC' a b
     | n1==n2 && n1==r = unsafePerformIO $ do
         s <- createMatrix RowMajor r c
-        c_luSolveC // matc a // matc b // matc s // check "luSolveC" [cdat a, cdat b]
+        ww3 withMatrix a withMatrix b withMatrix s $ \ a b s ->
+            c_luSolveC // a // b // s // check "luSolveC"
         return s
     | otherwise = error "luSolveC of nonsquare matrix"
   where n1 = rows a
@@ -256,7 +266,8 @@ luRaux = luRaux' . cmat
 
 luRaux' x = unsafePerformIO $ do
     res <- createVector (r*r+r+1)
-    c_luRaux // matc x // vec res // check "luRaux" [cdat x]
+    ww2 withMatrix x withVector res $ \x res ->
+        c_luRaux // x // res // check "luRaux"
     return res
   where r = rows x
         c = cols x
@@ -269,7 +280,8 @@ luCaux = luCaux' . cmat
 
 luCaux' x = unsafePerformIO $ do
     res <- createVector (r*r+r+1)
-    c_luCaux // matc x // vec res // check "luCaux" [cdat x]
+    ww2 withMatrix x withVector res $ \x res ->
+        c_luCaux // x // res // check "luCaux"
     return res
   where r = rows x
         c = cols x
diff --git a/lib/Numeric/GSL/Minimization.hs b/lib/Numeric/GSL/Minimization.hs
index f523849..e44b2e5 100644
--- a/lib/Numeric/GSL/Minimization.hs
+++ b/lib/Numeric/GSL/Minimization.hs
@@ -26,7 +26,6 @@ import Data.Packed.Matrix
 import Foreign
 import Complex
 
-
 -------------------------------------------------------------------------
 
 {- | The method of Nelder and Mead, implemented by /gsl_multimin_fminimizer_nmsimplex/. The gradient of the function is not required. This is the example in the GSL manual:
@@ -85,9 +84,10 @@ minimizeNMSimplex f xi sz tol maxit = unsafePerformIO $ do
         szv = fromList sz
         n   = dim xiv
     fp <- mkVecfun (iv (f.toList))
-    rawpath <- createMIO maxit (n+3)
-                         (c_minimizeNMSimplex fp tol maxit // vec xiv // vec szv) 
-                         "minimizeNMSimplex" [xiv,szv]
+    rawpath <- ww2 withVector xiv withVector szv $ \xiv szv ->
+                   createMIO maxit (n+3)
+                         (c_minimizeNMSimplex fp tol maxit // xiv // szv)
+                         "minimizeNMSimplex"
     let it = round (rawpath @@> (maxit-1,0))
         path = takeRows it rawpath
         [sol] = toLists $ dropRows (it-1) path
@@ -150,9 +150,10 @@ minimizeConjugateGradient istep minimpar tol maxit f df xi = unsafePerformIO $ d
         df' = (fromList . df . toList)
     fp <- mkVecfun (iv f')
     dfp <- mkVecVecfun (aux_vTov df')
-    rawpath <- createMIO maxit (n+2)
-                         (c_minimizeConjugateGradient fp dfp istep minimpar tol maxit // vec xiv)
-                         "minimizeDerivV" [xiv]
+    rawpath <- withVector xiv $ \xiv ->
+                    createMIO maxit (n+2)
+                         (c_minimizeConjugateGradient fp dfp istep minimpar tol maxit // xiv)
+                         "minimizeDerivV"
     let it = round (rawpath @@> (maxit-1,0))
         path = takeRows it rawpath
         sol = toList $ cdat $ dropColumns 2 $ dropRows (it-1) path
@@ -169,7 +170,7 @@ foreign import ccall "gsl-aux.h minimizeWithDeriv"
 
 ---------------------------------------------------------------------
 iv :: (Vector Double -> Double) -> (Int -> Ptr Double -> Double)
-iv f n p = f (createV n copy "iv" []) where
+iv f n p = f (createV n copy "iv") where
     copy n q = do 
         copyArray q p n
         return 0
@@ -187,25 +188,30 @@ foreign import ccall "wrapper"
 aux_vTov :: (Vector Double -> Vector Double) -> (Int -> Ptr Double -> Ptr Double -> IO())
 aux_vTov f n p r = g where
     v@V {fptr = pr} = f x
-    x = createV n copy "aux_vTov" []
+    x = createV n copy "aux_vTov"
     copy n q = do
         copyArray q p n
         return 0
-    g = withForeignPtr pr $ \_ -> copyArray r (ptr v) n
+    g = withForeignPtr pr $ \p -> copyArray r p n
 
 --------------------------------------------------------------------
 
-createV n fun msg ptrs = unsafePerformIO $ do
+
+createV n fun msg = unsafePerformIO $ do
     r <- createVector n
-    fun // vec r // check msg ptrs
+    withVector r $ \ r ->
+        fun // r // check msg
     return r
 
+{-
 createM r c fun msg ptrs = unsafePerformIO $ do
     r <- createMatrix RowMajor r c
     fun // matc r // check msg ptrs
     return r
+-}
 
-createMIO r c fun msg ptrs = do
+createMIO r c fun msg = do
     r <- createMatrix RowMajor r c
-    fun // matc r // check msg ptrs
+    withMatrix r $ \ r ->
+        fun // r // check msg
     return r
diff --git a/lib/Numeric/GSL/Polynomials.hs b/lib/Numeric/GSL/Polynomials.hs
index 42694f0..e663711 100644
--- a/lib/Numeric/GSL/Polynomials.hs
+++ b/lib/Numeric/GSL/Polynomials.hs
@@ -47,7 +47,8 @@ polySolve = toList . polySolve' . fromList
 polySolve' :: Vector Double -> Vector (Complex Double)
 polySolve' v | dim v > 1 = unsafePerformIO $ do
     r <- createVector (dim v-1)
-    c_polySolve // vec v // vec r // check "polySolve" [v]
+    ww2 withVector v withVector r $ \ v r ->
+        c_polySolve // v // r // check "polySolve"
     return r
              | otherwise = error "polySolve on a polynomial of degree zero"
 
diff --git a/lib/Numeric/GSL/Special/Internal.hs b/lib/Numeric/GSL/Special/Internal.hs
index a08809b..ca36009 100644
--- a/lib/Numeric/GSL/Special/Internal.hs
+++ b/lib/Numeric/GSL/Special/Internal.hs
@@ -45,7 +45,7 @@ type Size_t = Int
 createSFR :: Storable a => String -> (Ptr a -> IO Int) -> (a, a)
 createSFR s f = unsafePerformIO $ do
     p <- mallocArray 2
-    f p // check s []
+    f p // check s
     [val,err] <- peekArray 2 p
     free p
     return (val,err)
@@ -60,7 +60,7 @@ createSFR_E10 s f = unsafePerformIO $ do
     let sd = sizeOf (0::Double)
     let si = sizeOf (0::Int)
     p <- mallocBytes (2*sd + si)
-    f p // check s []
+    f p // check s
     val <- peekByteOff p 0
     err <- peekByteOff p sd
     expo <- peekByteOff p (2*sd) 
diff --git a/lib/Numeric/GSL/Vector.hs b/lib/Numeric/GSL/Vector.hs
index d94b377..65f3a2e 100644
--- a/lib/Numeric/GSL/Vector.hs
+++ b/lib/Numeric/GSL/Vector.hs
@@ -73,24 +73,28 @@ data FunCodeS = Norm2
 
 toScalarAux fun code v = unsafePerformIO $ do
     r <- createVector 1
-    fun (fromEnum code) // vec v // vec r // check "toScalarAux" [v]
+    ww2 withVector v withVector r $ \v r ->
+        fun (fromEnum code) // v // r // check "toScalarAux"
     return (r `at` 0)
 
 vectorMapAux fun code v = unsafePerformIO $ do
     r <- createVector (dim v)
-    fun (fromEnum code) // vec v // vec r // check "vectorMapAux" [v]
+    ww2 withVector v withVector r $ \v r ->
+        fun (fromEnum code) // v // r // check "vectorMapAux"
     return r
 
 vectorMapValAux fun code val v = unsafePerformIO $ do
     r <- createVector (dim v)
     pval <- newArray [val]
-    fun (fromEnum code) pval // vec v // vec r // check "vectorMapValAux" [v]
+    ww2 withVector v withVector r $ \v r ->
+        fun (fromEnum code) pval // v // r // check "vectorMapValAux"
     free pval
     return r
 
 vectorZipAux fun code u v = unsafePerformIO $ do
     r <- createVector (dim u)
-    fun (fromEnum code) // vec u // vec v // vec r // check "vectorZipAux" [u,v]
+    ww3 withVector u withVector v withVector r $ \u v r ->
+        fun (fromEnum code) // u // v // r // check "vectorZipAux"
     return r
 
 ---------------------------------------------------------------------
diff --git a/lib/Numeric/LinearAlgebra/LAPACK.hs b/lib/Numeric/LinearAlgebra/LAPACK.hs
index 315be17..19516e3 100644
--- a/lib/Numeric/LinearAlgebra/LAPACK.hs
+++ b/lib/Numeric/LinearAlgebra/LAPACK.hs
@@ -61,7 +61,8 @@ svdAux f st x = unsafePerformIO $ do
     u <- createMatrix ColumnMajor r r
     s <- createVector (min r c)
     v <- createMatrix ColumnMajor c c
-    f // matf x // matf u // vec s // matf v // check st [fdat x]
+    ww4 withMatrix x withMatrix u withVector s withMatrix v $ \x u s v ->
+        f // x // u // s // v // check st
     return (u,s,trans v)
   where r = rows x
         c = cols x
@@ -73,7 +74,8 @@ eigAux f st m
         l <- createVector r
         v <- createMatrix ColumnMajor r r
         dummy <- createMatrix ColumnMajor 1 1
-        f // matf m // matf dummy // vec l // matf v // check st [fdat m]
+        ww4 withMatrix m withMatrix dummy withVector l withMatrix v $ \m dummy l v ->
+            f // m // dummy // l // v // check st
         return (l,v)
   where r = rows m
 
@@ -115,7 +117,8 @@ eigRaux m
         l <- createVector r
         v <- createMatrix ColumnMajor r r
         dummy <- createMatrix ColumnMajor 1 1
-        dgeev // matf m // matf dummy // vec l // matf v // check "eigR" [fdat m]
+        ww4 withMatrix m withMatrix dummy withVector l withMatrix v $ \m dummy l v ->
+            dgeev // m // dummy // l // v // check "eigR"
         return (l,v)
   where r = rows m
 
@@ -144,7 +147,8 @@ eigS' m
     | otherwise = unsafePerformIO $ do
         l <- createVector r
         v <- createMatrix ColumnMajor r r
-        dsyev // matf m // vec l // matf v // check "eigS" [fdat m]
+        ww3 withMatrix m withVector l withMatrix v $ \m l v ->
+            dsyev // m // l // v // check "eigS"
         return (l,v)
   where r = rows m
 
@@ -166,7 +170,8 @@ eigH' m
     | otherwise = unsafePerformIO $ do
         l <- createVector r
         v <- createMatrix ColumnMajor r r
-        zheev // matf m // vec l // matf v // check "eigH" [fdat m]
+        ww3 withMatrix m withVector l withMatrix v $ \m l v ->
+            zheev // m // l // v // check "eigH"
         return (l,v)
   where r = rows m
 
@@ -177,7 +182,8 @@ foreign import ccall "LAPACK/lapack-aux.h linearSolveC_l" zgesv :: TCMCMCM
 linearSolveSQAux f st a b
     | n1==n2 && n1==r = unsafePerformIO $ do
         s <- createMatrix ColumnMajor r c
-        f // matf a // matf b // matf s // check st [fdat a, fdat b]
+        ww3 withMatrix a withMatrix b withMatrix s $ \a b s ->
+            f // a // b // s // check st
         return s
     | otherwise = error $ st ++ " of nonsquare matrix"
   where n1 = rows a
@@ -201,7 +207,8 @@ foreign import ccall "LAPACK/lapack-aux.h linearSolveSVDC_l" zgelss :: Double ->
 
 linearSolveAux f st a b = unsafePerformIO $ do
     r <- createMatrix ColumnMajor (max m n) nrhs
-    f // matf a // matf b // matf r // check st [fdat a, fdat b]
+    ww3 withMatrix a withMatrix b withMatrix r $ \a b r ->
+            f // a // b // r // check st
     return r
   where m = rows a
         n = cols a
@@ -251,7 +258,8 @@ cholS = cholAux dpotrf "cholS" . fmat
 
 cholAux f st a = unsafePerformIO $ do
     r <- createMatrix ColumnMajor n n
-    f // matf a // matf r // check st [fdat a]
+    ww2 withMatrix a withMatrix r $ \a r ->
+        f // a // r // check st
     return r
   where n = rows a
 
@@ -270,8 +278,8 @@ qrC = qrAux zgeqr2 "qrC" . fmat
 qrAux f st a = unsafePerformIO $ do
     r <- createMatrix ColumnMajor m n
     tau <- createVector mn
-    withForeignPtr (fptr $ fdat $ a) $ \p ->
-        f m n p // vec tau // matf r // check st [fdat a]
+    ww3 withMatrix a withMatrix r withVector tau $ \ a r tau ->
+        f // a // tau // r // check st
     return (r,tau)
   where m = rows a
         n = cols a
@@ -292,7 +300,8 @@ hessC = hessAux zgehrd "hessC" . fmat
 hessAux f st a = unsafePerformIO $ do
     r <- createMatrix ColumnMajor m n
     tau <- createVector (mn-1)
-    f // matf a // vec tau // matf r // check st [fdat a]
+    ww3 withMatrix a withMatrix r withVector tau $ \ a r tau ->
+        f // a // tau // r // check st
     return (r,tau)
   where m = rows a
         n = cols a
@@ -313,7 +322,8 @@ schurC = schurAux zgees "schurC" . fmat
 schurAux f st a = unsafePerformIO $ do
     u <- createMatrix ColumnMajor n n
     s <- createMatrix ColumnMajor n n
-    f // matf a // matf u // matf s // check st [fdat a]
+    ww3 withMatrix a withMatrix u withMatrix s $ \ a u s ->
+        f // a // u // s // check st
     return (u,s)
   where n = rows a